Gene Information

Name : escT (CV_2609)
Accession : NP_902279.1
Strain : Chromobacterium violaceum ATCC 12472
Genome accession: NC_005085
Putative virulence/resistance : Virulence
Product : type III secretion system EscT protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4791
EC number : -
Position : 2817405 - 2818178 bp
Length : 774 bp
Strand : +
Note : identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1684/TC:3.A.6.1.1

DNA sequence : 
ATGGTCTACTGGACGCAATGGCTGCCGGTGCTCGGCCTGTGCATGCTGCGCCCGCTGGGTGTCTTTCTGCTGATGCCGCT
GTTCAGCACCGCCAATCTGGGCGGCGCGCTGATCCGCAACTCGCTGGTGCTGATGATCGCTCTGCCCCTGCTGCCGGTTT
ACCCGCAATGGCAGCTGCCCGCTGCCGGCGCCTGGGGCTATGTCCTGCTCGCTGCCGGAGAAATATGTATCGGGCTCATG
ATCGGCTTCTGCGCCGCCATCCCGTTCTGGGTGCTGGACATGGCCGGTTTCCTGATAGACACCATGCGCGGCTCGTCGAT
GGCCAGCGTGCTGAACCCCTTGCTGGGCCAGCAGTCCTCGCTGTTCGGCCTGCTGTTCACTCAGATATTCGGCGTGCTGT
TTCTGATCAGCGGCGGCTTCAATGAATTGCTCGAAGCGATTTACCAGTCCTACGTGACCCTGCCGCCCGGCGCCGCCATC
CACTACTCGCCCGAAGCCCTGTCGTTCTTCTATCGTCAATGGCAGCTGATGTACGAGCTGTGCCTGCGCTTTTCCATGCC
CGCCATCGTGGTCATCCTGCTGGTGGACATGGCGCTGGGCCTGGTCAACCGTTCCGCTCAGCAATTGAATGTGTTTTTTC
TGTCCATGCCGATCAAGAGCGCGTTCGCGCTGCTGATGCTGATCGTCAGCCTGAGCTTCGCCTTCAACGGCTTGCTGGAT
TACAGCGCGCATTTCACCAAGCTGACCGACGCCTTGCTGGAGCAGTTGAGATGA

Protein sequence : 
MVYWTQWLPVLGLCMLRPLGVFLLMPLFSTANLGGALIRNSLVLMIALPLLPVYPQWQLPAAGAWGYVLLAAGEICIGLM
IGFCAAIPFWVLDMAGFLIDTMRGSSMASVLNPLLGQQSSLFGLLFTQIFGVLFLISGGFNELLEAIYQSYVTLPPGAAI
HYSPEALSFFYRQWQLMYELCLRFSMPAIVVILLVDMALGLVNRSAQQLNVFFLSMPIKSAFALLMLIVSLSFAFNGLLD
YSAHFTKLTDALLEQLR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0272 YP_002345354.1 type III secretion apparatus protein Virulence Not named Protein 2e-44 53
ssaT YP_216429.1 secretion system apparatus protein SsaT Virulence SPI-2 Protein 7e-40 46
ssaT CAA68201.1 secretion system apparatus, SsaT Virulence SPI-2 Protein 3e-39 46
ssaT NP_460386.1 type III secretion system apparatus protein Virulence SPI-2 Protein 4e-39 46
ssaT NP_456107.1 putative type III secretion protein Virulence SPI-2 Protein 2e-39 46
ssaT NP_805092.1 type III secretion protein Virulence SPI-2 Protein 2e-39 46
lscT AAO18038.1 LscT Virulence TTSS locus Protein 4e-23 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
escT NP_902279.1 type III secretion system EscT protein VFG0521 Protein 2e-39 46