Gene Information

Name : sipC (CV_2618)
Accession : NP_902288.1
Strain : Chromobacterium violaceum ATCC 12472
Genome accession: NC_005085
Putative virulence/resistance : Virulence
Product : cell invasion protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2825691 - 2826758 bp
Length : 1068 bp
Strand : -
Note : identified by sequence similarity; ORF located using Blastx/COG0840

DNA sequence :
CTGGCCCAGCCCAAGAGCCTGCTGAAGCCGGAAGACGCCGGCGTGCTGCATAGCTGGCTGGCCGCCAAGCGCGAGGACGC
GGGCTTCACCGCCGGCGTCGAGCACACCGCCAACAAGCTGGAACAGATCATCGACAAGGAGCTGGAACAGCGCGGCGCCG
AGCAGGACCCCGGCTTCGACATCAGCGGCCTGTCCACCCGGATGGCGGCGCTGCTGTCCCAGGCCATCGTGCTGATGTCG
GCGCTGCGCACCGCGGACAACGCGCTGAGCACCAAGCTGTCGCTGGTCAGCTTCGACGCCACCAAGGCCACCGCGGCATC
GATGGTGCGCGAGGGCATCGCCAACCTGTCCAGCAGCATCGTGCAGAGCGTGGGCCAGGTGGCCATCACCGGCGTCGGGG
CCAAGAAGAGCCTGAACGGCCTCAACGCCGAGCGCGGCGCGCTGAAGAACAACGCCCCCAAGCTCGGCAAGCTGGGCGAC
GAGGGCCGCAACGTTCAGGCCACGCTGAGCCGCCAGAACACGGTCAAACTGGCTGCTGATGCCGATGGCCTGAAGCAGGT
GGGCCTGAAGCCGCAGAACGGCGCGGCAAGGCCCGAAGTGGCCGAGCTGAGCGCGCAGCCGAATGCGGCCGCCAGCGTGG
CCGACGGCATGGCCGGCGACAAGATCAGCCTGCAGTCCAGCAATTCGAAGCTGGCCAGGCAGCATGAGGCCGCGCTGGGC
AGCAGCACCGAGGACCTGACGGCCAAGAGCCAGGCCGAGCAGCTGGCGATGGACGATACCAAGCTCAAGGCGCAGGCCAA
GCAGACCACCGGCAAGGCGATCATGGACAGCTCGGCCGCGGCCGGCAACATCGCCGGCGGCTCCGGCCGCTACGCCGCCA
CGCTGGAACAGTCCGAGCAGCAGATCAGCCAGGCTTCCAGCCGCGTGGCCAGCACGGCTTCCGAGGAGACCCGCGAAAGC
AGCCGCAAGGCCGACAGCATCATCCAGGAGCTGCTGCGCACGCTGGAAGGCATCAGCCAGTCCAAGAGCTCGGCCATGGC
CGCGATCGCCGGCAACATCCGCGTCTGA

Protein sequence :
MAQPKSLLKPEDAGVLHSWLAAKREDAGFTAGVEHTANKLEQIIDKELEQRGAEQDPGFDISGLSTRMAALLSQAIVLMS
ALRTADNALSTKLSLVSFDATKATAASMVREGIANLSSSIVQSVGQVAITGVGAKKSLNGLNAERGALKNNAPKLGKLGD
EGRNVQATLSRQNTVKLAADADGLKQVGLKPQNGAARPEVAELSAQPNAAASVADGMAGDKISLQSSNSKLARQHEAALG
SSTEDLTAKSQAEQLAMDDTKLKAQAKQTTGKAIMDSSAAAGNIAGGSGRYAATLEQSEQQISQASSRVASTASEETRES
SRKADSIIQELLRTLEGISQSKSSAMAAIAGNIRV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sipC YP_217803.1 cell invasion protein Virulence SPI-1 Protein 1e-42 45
sipC NP_461805.1 translocation machinery component Virulence SPI-1 Protein 1e-42 45
sipC NP_457278.1 pathogenicity island 1 effector protein Virulence SPI-1 Protein 1e-42 45
sipC NP_806487.1 pathogenicity island 1 effector protein Virulence SPI-1 Protein 1e-42 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sipC NP_902288.1 cell invasion protein VFG0545 Protein 6e-43 45