Gene Information

Name : Dd586_2641 (Dd586_2641)
Accession : YP_003334189.1
Strain : Dickeya dadantii Ech586
Genome accession: NC_013592
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2977397 - 2978092 bp
Length : 696 bp
Strand : +
Note : KEGG: ypy:YPK_2192 two component heavy metal response transcriptional regulator; TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver

DNA sequence :
ATGCGATTACTACTGGTTGAAGATGAGGAGAAAACCTCATCTTATATCTACCGAGCGCTAAGCGAACTAGGCTATATGGT
CGATATAGCTGCCGACGGGATAGAAGGTTTACATCTCGCGGTTCAGTACGACTATGACGCCATAATTCTGGACGTTATGC
TGCCGGGAAAAGATGGATACTCAGTACTGGAAGGATTACGCCTCCATAAACAAACACCAGTGCTAATGCTATCAGCTCGC
GGCTCAGTCGATGAGCGCGTGAAAGGATTACGGCATGGGGCTGACGATTATTTGTCAAAGCCCTTTTCTTTAATTGAGCT
TGTCGCTCGGATTCAGGCGCTACTGCGTCGCCGAGTCAGTGACGGTGCAGATGTCACACAGCTACATATCGATGATATGC
ATCTCGATCTTCTGGCAAGACGCGTAACTCGTGCAGGGCAACGTCTGGAACTGACAGCTAAAGAATTCGCGTTACTGAGC
CTGCTAGCACGACATCAAGGCGAGATACTGTCGAAAATGATGATTGCCGAGCAGGTATGGGATATGAATTTCGATAGCGA
TGCCAATGTGGTAGAGGTGGCTGTCAAGCGACTAAGAGCCAAAGTGGACACCCCCTATACAGTGAAACTGCTCCATACCG
TCAGGGGAATGGGCTATGTGTTAGAAAATCGCCCCACGCCTCAAGCTGATCAATGA

Protein sequence :
MRLLLVEDEEKTSSYIYRALSELGYMVDIAADGIEGLHLAVQYDYDAIILDVMLPGKDGYSVLEGLRLHKQTPVLMLSAR
GSVDERVKGLRHGADDYLSKPFSLIELVARIQALLRRRVSDGADVTQLHIDDMHLDLLARRVTRAGQRLELTAKEFALLS
LLARHQGEILSKMMIAEQVWDMNFDSDANVVEVAVKRLRAKVDTPYTVKLLHTVRGMGYVLENRPTPQADQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-54 52
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-53 51

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dd586_2641 YP_003334189.1 winged helix family two component transcriptional regulator BAC0083 Protein 1e-58 58
Dd586_2641 YP_003334189.1 winged helix family two component transcriptional regulator BAC0197 Protein 5e-61 56
Dd586_2641 YP_003334189.1 winged helix family two component transcriptional regulator BAC0125 Protein 7e-60 55
Dd586_2641 YP_003334189.1 winged helix family two component transcriptional regulator BAC0638 Protein 2e-51 53
Dd586_2641 YP_003334189.1 winged helix family two component transcriptional regulator BAC0111 Protein 2e-58 53
Dd586_2641 YP_003334189.1 winged helix family two component transcriptional regulator BAC0308 Protein 5e-51 51
Dd586_2641 YP_003334189.1 winged helix family two component transcriptional regulator BAC0347 Protein 5e-51 50
Dd586_2641 YP_003334189.1 winged helix family two component transcriptional regulator NC_003923.1003749.p0 Protein 5e-29 41
Dd586_2641 YP_003334189.1 winged helix family two component transcriptional regulator HE999704.1.gene1528. Protein 7e-29 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dd586_2641 YP_003334189.1 winged helix family two component transcriptional regulator VFG0596 Protein 9e-55 52
Dd586_2641 YP_003334189.1 winged helix family two component transcriptional regulator VFG1389 Protein 4e-38 46
Dd586_2641 YP_003334189.1 winged helix family two component transcriptional regulator VFG1390 Protein 5e-39 44
Dd586_2641 YP_003334189.1 winged helix family two component transcriptional regulator VFG1386 Protein 1e-34 42