Gene Information

Name : hpcC (SPOA0027)
Accession : YP_164858.1
Strain :
Genome accession: NC_006569
Putative virulence/resistance : Virulence
Product : 5-carboxy-2-hydroxymuconate semialdehyde dehydrogenase
Function : -
COG functional category : C : Energy production and conversion
COG ID : COG1012
EC number : 1.2.1.60
Position : 23017 - 24525 bp
Length : 1509 bp
Strand : -
Note : identified by similarity to SP:P42269; match to protein family HMM PF00171

DNA sequence :
ATGCCCGACCTCAGCACCAGGCTGGCCGATCTTGACCGACATCTCCAGCGGTTTCGCCGCGACGGGGTGATGAACCGGAT
TGGCGGGCAGGACGTACCGGGCGGCGCGGGGCGGTTCGACAGCATCTCTCCGGTCGACAGATCGGTGATCTGTTCTGTGG
CGCGCGGCGACGCGGCCGATATGGACGCGGCGGCAAGGGCCGCACATGCGGCCTTTCCCGCCTGGCGCGACATGCCCGCG
ACCGAGCGGCGCGCCATCCTGATCCGCATCGCCGAAGGAATCGAGGCGCGAGCCGAGGAAATCGCGCTGTGTGAATGCTG
GGACACCGGGCAGGCCTGGCGCTTCATGTCCAAGGCGGCGCTGCGCGGGGCCGAGAATTTCCGCTATTTCGCGGATCAGG
TGGTGCAGGCGCGCGATGGGCAGCATCTGAAATCGCCCACTTTGATGAATATCACCACCCGCGTTCCGATCGGCCCGGTG
GGGGTGATCACGCCGTGGAACACGCCGTTCATGCTGTCCACCTGGAAGATTGCGCCGGCGCTGGCCGCCGGTTGCACCGT
GGTGCATAAACCCGCCGAGCTCAGCCCGCTGAGCGCGCGGCTGTTGATCGAGATCGCCGAAGAGGCGGGCCTGCCCCCCG
GGGTGCTGAACCTGGTCAACGGATTTGGCGAGGATGCGGGCAAGGCGCTGACCGAACATCCGCTGATCAAGGCCGTGGCC
TTTGTCGGCGAAAGCCGCACCGGCAGCCTGATCGTGAAACAGGGGGCCGACACGCTGAAGCGGGTGCATCTGGAACTGGG
CGGCAAGAACCCGGTGATCGTGTTCGACGATGCCGATACCGAGCGCGCGCTGGATGCGGTGATCTTCATGATCTACTCAA
TCAACGGCGAACGCTGCACGTCCTCCTCGCGCTTGCTTGTGCAGGACACGATCCGCGAAGAGTTCGAGGCGCGGCTGGTC
GAACGCGTGAACAACATCAAGGTGGGCCACCCGCTGGATCCGACAACCGAGATCGGGCCGCTGATCGGCGAGGAGCATTT
TGCCAAGGTTACCAGCTACTTCGACATCGCGCGCCAGGACGGCGCCACCGTCGCAGCGGGCGGTGAGGTGGTGGGCGACC
AAGGCTATTTCGTGCGCCCCACCCTGTTTACCGGCGCCAACAACCGGATGCGTATCGCGCGCGAAGAGATTTTCGGCCCG
GTGCTGACCGCGATCCCGTTTTCGACGGAAGAAGAGGCGCTGCAAATCGCCAATGACACGCCCTATGGGCTGACCGGCTA
TCTCTGGACTAACGACCTGACGCGCGCGCTGCGGTTCACCGACAAGCTCGAGGCCGGGATGATCTGGGTGAACTCCGAGA
ATGTGCGCCACCTGCCCACCCCCTTTGGCGGGGTCAAGGCCAGCGGCATCGGCCGCGACGGCGGCGACTGGTCGTTTGAA
TTCTACATGGAGCAGAAGCACATCGGCTTTGCCACCGGCCAGCACAAGATCCAGCGCCTGGGCGCCTGA

Protein sequence :
MPDLSTRLADLDRHLQRFRRDGVMNRIGGQDVPGGAGRFDSISPVDRSVICSVARGDAADMDAAARAAHAAFPAWRDMPA
TERRAILIRIAEGIEARAEEIALCECWDTGQAWRFMSKAALRGAENFRYFADQVVQARDGQHLKSPTLMNITTRVPIGPV
GVITPWNTPFMLSTWKIAPALAAGCTVVHKPAELSPLSARLLIEIAEEAGLPPGVLNLVNGFGEDAGKALTEHPLIKAVA
FVGESRTGSLIVKQGADTLKRVHLELGGKNPVIVFDDADTERALDAVIFMIYSINGERCTSSSRLLVQDTIREEFEARLV
ERVNNIKVGHPLDPTTEIGPLIGEEHFAKVTSYFDIARQDGATVAAGGEVVGDQGYFVRPTLFTGANNRMRIAREEIFGP
VLTAIPFSTEEEALQIANDTPYGLTGYLWTNDLTRALRFTDKLEAGMIWVNSENVRHLPTPFGGVKASGIGRDGGDWSFE
FYMEQKHIGFATGQHKIQRLGA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hpaE AAO17179.1 HpaE Not tested tcd island Protein 2e-84 48
VC0819 NP_230467.2 aldehyde dehydrogenase Not tested VPI-1 Protein 5e-65 42
aldA AAK20776.1 aldehyde dehydrogenase Virulence VPI Protein 6e-65 42
aldA AAC12273.1 aldehyde dehydrogenase Virulence VPI Protein 6e-65 42
aldA AAK20747.1 aldehyde dehydrogenase Virulence VPI Protein 6e-65 42
aldA-1 YP_001216300.1 aldehyde dehydrogenase Not tested VPI-1 Protein 1e-64 42
unnamed AAK01506.1 putative aldehyde dehydrogenase Not tested PAGI-1 Protein 8e-60 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hpcC YP_164858.1 5-carboxy-2-hydroxymuconate semialdehyde dehydrogenase VFG0082 Protein 2e-65 42