Gene Information

Name : Dfer_2743 (Dfer_2743)
Accession : YP_003087123.1
Strain : Dyadobacter fermentans DSM 18053
Genome accession: NC_013037
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3391259 - 3391945 bp
Length : 687 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bfr:BF0209 two-component system response regulator

DNA sequence : 
ATGAAAAAAATCCTTATCGTTGAGGATGACCGCCGTATTGCCCAGAACATTTTCCGCGGGCTGGCCGCCGAAAATTTTGA
AGCCGAAATCGCCTACGACGGCATTACCGGCAAGCAAATGGCCCTGGAAAAAAAATTCGACCTGGTACTGCTGGACGTGA
ACCTACCCGGCATGAAAGGCTACGACGTGTGCCAGCAACTCAGGGTCTACAAACCGTCGCTGCCGATCATAATGCTTACA
GCATTCGGGGAAATTGAGGACAAAGTGGAAGGATTGAACAGCGGCGCCGACGATTACATTGTTAAGCCATTCGATTTCAG
GGAATTGCTGGCCAGAATCTATGCCGCATTGCGGGTTTCTGACCTAATGCACCCCGAAACTTCCGATAAAATCCTCCGCA
TTGCCGATCTCGAAATGAACCTCGGAACCAAACAGGTGCGCCGGGCCGGCCAGGTGATCGACCTCACGGCCAAGGAATTT
GCATTGCTGGAATACTTCCTGCTCCACCGCGGGCGCGTGGTTTCCAAAATGGACCTCGCAGAGCACGTGTGGCACCTCAA
TTTCGACCCAGGCACCAATGTAGTGGAGGTGTATATCAATTATTTACGTAAAAAAGTGGATAAAGACTTCCCTACGAAGC
TCATCCACACCCGGCCGGGCATGGGTTACATTATGAAAGAAGAATAG

Protein sequence : 
MKKILIVEDDRRIAQNIFRGLAAENFEAEIAYDGITGKQMALEKKFDLVLLDVNLPGMKGYDVCQQLRVYKPSLPIIMLT
AFGEIEDKVEGLNSGADDYIVKPFDFRELLARIYAALRVSDLMHPETSDKILRIADLEMNLGTKQVRRAGQVIDLTAKEF
ALLEYFLLHRGRVVSKMDLAEHVWHLNFDPGTNVVEVYINYLRKKVDKDFPTKLIHTRPGMGYIMKEE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-37 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 9e-37 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dfer_2743 YP_003087123.1 winged helix family two component transcriptional regulator BAC0125 Protein 1e-42 46
Dfer_2743 YP_003087123.1 winged helix family two component transcriptional regulator BAC0197 Protein 4e-41 44
Dfer_2743 YP_003087123.1 winged helix family two component transcriptional regulator BAC0638 Protein 1e-35 44
Dfer_2743 YP_003087123.1 winged helix family two component transcriptional regulator BAC0083 Protein 3e-42 43
Dfer_2743 YP_003087123.1 winged helix family two component transcriptional regulator BAC0347 Protein 5e-41 43
Dfer_2743 YP_003087123.1 winged helix family two component transcriptional regulator BAC0111 Protein 8e-46 43
Dfer_2743 YP_003087123.1 winged helix family two component transcriptional regulator AE015929.1.gene1106. Protein 2e-30 42
Dfer_2743 YP_003087123.1 winged helix family two component transcriptional regulator AE000516.2.gene3505. Protein 6e-27 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dfer_2743 YP_003087123.1 winged helix family two component transcriptional regulator VFG0596 Protein 1e-37 43