Gene Information

Name : SNSL254_A0299 (SNSL254_A0299)
Accession : YP_002039507.1
Strain : Salmonella enterica SL254
Genome accession: NC_011080
Putative virulence/resistance : Virulence
Product : type VI secretion protein
Function : -
COG functional category : S : Function unknown
COG ID : COG3516
EC number : -
Position : 315913 - 316455 bp
Length : 543 bp
Strand : +
Note : identified by match to protein family HMM PF05591; match to protein family HMM TIGR03358

DNA sequence :
ATGGCTATCAACAATAGCGCGCAGAAATTCATCGCGCGCAACCGCGCGCCGCGCGTGCAGATTGAATATGACGTAGAGAT
TTACGGCTCTGAGAAAAAAATCGAGCTGCCGTTCGTGATGGCGGTGCTGGCCGATCTGGCCGGGAAACCGCGTGAAGAAC
TGCCGCCGGTGACGGATCGCAAATTCCTCGATATTGATATTGATAACTTCAATGAGCGCATGAAAGCCATTGCGCCGCGC
GTGGCGTTCGCTGTGCCGAATACGCTGACGGGTGAAGGTCAGTTGATGGTCGATATCACGCTGGAAAATATGGACGACTT
TTCGCCGGCACAGATTGCCCGCAAGGTGGACGCCCTGAACCAGTTACTGGAAGCCCGCACTCAACTGGCGAACCTCCAGA
CCTACATGGATGGCAAGGCCGGGGCGGAAAATCTGGTCAATAAACTGTTGCAGGACCCGACTCTGCTGAAAACGCTGGCG
AATGCGCCGAAATCGGCCGCTACCCAGCAAGGTGTGTCAGCGGATAATGAATCAGCGGAATAA

Protein sequence :
MAINNSAQKFIARNRAPRVQIEYDVEIYGSEKKIELPFVMAVLADLAGKPREELPPVTDRKFLDIDIDNFNERMKAIAPR
VAFAVPNTLTGEGQLMVDITLENMDDFSPAQIARKVDALNQLLEARTQLANLQTYMDGKAGAENLVNKLLQDPTLLKTLA
NAPKSAATQQGVSADNESAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0297 NP_454879.1 conserved hypothetical protein Not tested SPI-6 Protein 2e-79 100

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SNSL254_A0299 YP_002039507.1 type VI secretion protein VFG2069 Protein 7e-58 71