Gene Information

Name : SNSL254_A0300 (SNSL254_A0300)
Accession : YP_002039508.1
Strain : Salmonella enterica SL254
Genome accession: NC_011080
Putative virulence/resistance : Virulence
Product : EvpB family type VI secretion protein
Function : -
COG functional category : S : Function unknown
COG ID : COG3517
EC number : -
Position : 316479 - 317987 bp
Length : 1509 bp
Strand : +
Note : identified by match to protein family HMM PF05943; match to protein family HMM TIGR03355

DNA sequence :
ATGGCAAACAGTAATATGCAGGCAACCGACGCGGTTGCTCAGGATACCGTCTCCGCATCCGGTGAATTTGATGCGTTGCT
GAATCAGGCCTTCCGACCCAAGACTACCCAGGCGGCAAAAGCCGTGGAAGCCGCGGTGCAGACGCTGGCGCAACAGGCGC
TGGCGAACACGATCACCGTCAGCGATGACGCCTATAAAAGCATCAGCGCTATTATTGCGCAGATCGACTTTAAACTGACC
GAACAGATCAAACTGATCCTGCAACATCCCGACTGGCAGAAGCTGGAATCCTCGTGGCGCGGTATGGAGCATCTGGTTTA
CAACACCGAGACCGACGAAAAGCTGAAAATCCGCTTCATGAATCTGTCAAAAGATGAATTGCGGCGCAACATGAAGCGTT
ACAAGGGCATCGCCTGGGATCAAAGCCCGATGTTCAAGAAACTGTATGAAGCCGAATACGGCCAGTTAGGTGGCGAACCT
TATGGCTGTATCATTGCGGATTACTACTTCGACCATACACCGCCCGATGTGGATCTGCTTGGCTCTATCGCCAAAGTCGC
CGCGTCGGCCCATGCGCCGTTTATTGCCGGGGCTTCCCCCTCGGTACTGCAAATGGACTCCTGGCAGGAGCTGGCGAATC
CCCGCGACCTGACCAAAATCGTCACCCAGAACCTGGAATATGCGCCGTGGAACTCGCTGCGGGCTAGCGAAGACTCCCGT
TATATTGGCCTGACGATGCCGCGTTTTCTTGCCCGCCTGCCGTATGGCGCAAAAACCAACCCGGTGGACGAGTTTGATTT
TGAAGAAGATGCGGATGGTTCTGACCATACTAAATACGTCTGGAGCAACGCGGCCTACGCGATGGGCGTAAACATCAACC
GTTCCTTCAAACACTACGGCTGGTGTACGTTGATTCGCGGTGTGGAATCAGGCGGTGCGGTGGAAAATCTTCCCTGCCAT
ACCTTCCCGACTGACGATGGCGGCGTGGACATGAAATGCCCGACCGAAATTGCCATCTCTGACCGCCGCGAGGCTGAACT
GGCGAAAAACGGTTTTATCCCGTTGATCCACCGTAAAAACTCAGACTATGCCGCCTTTATCGGCGCACAATCGCTGCAAA
AACCACAGGAATACTACGATCCGGACGCGACGGCCAACGCCAACCTGTCCGCCCGTCTGCCGTACCTGTTCGCCTGCTCG
CGCTTCGCTCACTTCCTCAAATGTATCGTCCGCGACAAAATCGGTTCCTTTAAAGAGCGTGAGGATATGCAGCGCTGGCT
AAATGAATGGATTATGAATTACGTCGACGCCGATCCGGTGAACTCCTCGCAAGAAACTAAAGCCCGTCGTCCGCTGGCTG
CCGCTGAAGTAGTGGTGGAAGAGGTGGAAGGCAATCCAGGTTATTACGACGCGAAATTCTTCCTGCGTCCGCATTTCCAG
CTTGAAGGGCTGACGGGATCGCTGCGCCTGGTGACAAAACTGCCGTCAGTGAAGCAGGGCAATGCCTGA

Protein sequence :
MANSNMQATDAVAQDTVSASGEFDALLNQAFRPKTTQAAKAVEAAVQTLAQQALANTITVSDDAYKSISAIIAQIDFKLT
EQIKLILQHPDWQKLESSWRGMEHLVYNTETDEKLKIRFMNLSKDELRRNMKRYKGIAWDQSPMFKKLYEAEYGQLGGEP
YGCIIADYYFDHTPPDVDLLGSIAKVAASAHAPFIAGASPSVLQMDSWQELANPRDLTKIVTQNLEYAPWNSLRASEDSR
YIGLTMPRFLARLPYGAKTNPVDEFDFEEDADGSDHTKYVWSNAAYAMGVNINRSFKHYGWCTLIRGVESGGAVENLPCH
TFPTDDGGVDMKCPTEIAISDRREAELAKNGFIPLIHRKNSDYAAFIGAQSLQKPQEYYDPDATANANLSARLPYLFACS
RFAHFLKCIVRDKIGSFKEREDMQRWLNEWIMNYVDADPVNSSQETKARRPLAAAEVVVEEVEGNPGYYDAKFFLRPHFQ
LEGLTGSLRLVTKLPSVKQGNA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec18 YP_851426.1 hypothetical protein Not tested PAI II APEC-O1 Protein 1e-78 42
aec18 AAQ96712.1 Aec18 Not tested AGI-1 Protein 1e-78 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SNSL254_A0300 YP_002039508.1 EvpB family type VI secretion protein VFG2070 Protein 2e-171 72
SNSL254_A0300 YP_002039508.1 EvpB family type VI secretion protein VFG2475 Protein 4e-82 45
SNSL254_A0300 YP_002039508.1 EvpB family type VI secretion protein VFG2093 Protein 5e-81 43