Gene Information

Name : RSP_3241 (RSP_3241)
Accession : REF_jgi:RSP_3241
Strain :
Genome accession: NC_007494
Putative virulence/resistance : Virulence
Product : Two-component transcriptional regulator, winged helix family
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 298563 - 299237 bp
Length : 675 bp
Strand : -
Note : IMG reference gene:2512956750; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal

DNA sequence :

ATGAAGATCCTGCTTGCCGAGGACGACCGCCAGACCGCCGACTACCTCCGCCAGGGTCTTCTGGCCGAGGGCTACAGCGT
GGATCATGTGCCCGACGGGCGCGACGCGCTGGTGCAGGCGACGCTGCAACCCTACGACCTCCTCGTGGTCGACCGGATGA
TGCCGGGGCTCGACGGGCTCTCGCTCGTCAAGGCGCTGCGCTCGGCGCAGATCAAGGCGCCGATCCTGATCCTCACCGCC
ATGGGCGGGGTGACGGACCGGGTCGAGGGGTTGCAGGCCGGGGCCGACGATTATCTGGTCAAGCCCTTCGCCTTCTCGGA
ACTGTCAGCGCGGCTGGCGGCGCTGGCGCGTCGTCCTGCCCTGGCCGAGGGGGCGCGCGATCTTCTGCGGGTGGGCGATC
TCACGCTCGACACCGTGCGCCGCACCGTCAGCCGCGGCGGCACCGAGATCGACCTCCAGCCGCGCGAATTCCGGCTTCTC
GAACATCTGATGCGGGCCGCGGGGCGCGTGCAGACGCGCACCATGCTGCTCGAAGCGGTCTGGGATTTCCATTTCGATCC
CGGCACCAGCGTCGTCGAGACCCACATGAGCCGCCTGCGCGCCAAGATCGACCGGCCGTTCGACAAGCCGCTGCTCCACA
CGGTCCGGGGCGCGGGCTACATGCTGAAGGCATGA

Protein sequence :

MKILLAEDDRQTADYLRQGLLAEGYSVDHVPDGRDALVQATLQPYDLLVVDRMMPGLDGLSLVKALRSAQIKAPILILTA
MGGVTDRVEGLQAGADDYLVKPFAFSELSARLAALARRPALAEGARDLLRVGDLTLDTVRRTVSRGGTEIDLQPREFRLL
EHLMRAAGRVQTRTMLLEAVWDFHFDPGTSVVETHMSRLRAKIDRPFDKPLLHTVRGAGYMLKA

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
copR	NP_460069.2	transcriptional regulatory protein YedW	Not tested	SPI-5	Protein	2e-38	47
copR	AAC33719.1	regulatory protein CopR	Not tested	SPI-5	Protein	3e-38	46

• Homologs from CARD and BacMet (resistance genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
RSP_3241	REF_jgi:RSP_3241	Two-component transcriptional regulator, winged helix family	BAC0083	Protein	3e-44	52
RSP_3241	REF_jgi:RSP_3241	Two-component transcriptional regulator, winged helix family	BAC0638	Protein	4e-35	47
RSP_3241	REF_jgi:RSP_3241	Two-component transcriptional regulator, winged helix family	BAC0125	Protein	2e-39	46
RSP_3241	REF_jgi:RSP_3241	Two-component transcriptional regulator, winged helix family	BAC0111	Protein	2e-39	46
RSP_3241	REF_jgi:RSP_3241	Two-component transcriptional regulator, winged helix family	BAC0197	Protein	7e-38	46
RSP_3241	REF_jgi:RSP_3241	Two-component transcriptional regulator, winged helix family	BAC0347	Protein	4e-35	45
RSP_3241	REF_jgi:RSP_3241	Two-component transcriptional regulator, winged helix family	BAC0308	Protein	1e-39	43

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
RSP_3241	REF_jgi:RSP_3241	Two-component transcriptional regulator, winged helix family	VFG0596	Protein	6e-39	47
RSP_3241	REF_jgi:RSP_3241	Two-component transcriptional regulator, winged helix family	VFG1390	Protein	3e-34	46
RSP_3241	REF_jgi:RSP_3241	Two-component transcriptional regulator, winged helix family	VFG0473	Protein	2e-24	42
RSP_3241	REF_jgi:RSP_3241	Two-component transcriptional regulator, winged helix family	VFG1389	Protein	7e-27	41