Gene Information

Name : AMEC673_14890 (AMEC673_14890)
Accession : YP_006800037.1
Strain : Alteromonas macleodii English Channel 673
Genome accession: NC_018678
Putative virulence/resistance : Virulence
Product : response regulator consisting of a CheY-like receiver domain-containing protein and a winged-helix DNA-binding domain-containing protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3482136 - 3482816 bp
Length : 681 bp
Strand : +
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence :
ATGAAAGTGCTACTTGTAGAAGATGATCCAAAGGTTGCCTCGCACATTGCAAATGGACTATTGGGTGAAGGGCATGAATG
TATTACTGTAGGTGATGGAACATCAGGCTACCAACAGGCGTCGAGTAACGAATTAGACGCCGTAATTCTGGATGTGATGC
TGCCCGAACTCGACGGTTTTTCTGTTTTAGAAAAACTTCGCGAAGAAGGCAATACAACGCCCGTTTTATTACTGAGTGCA
AAAAGTCAGGTTGAAGACAAGGTCAAAGGCCTTCGCACAGGCGCTAATGATTATTTAACTAAGCCTTTTGCCTTTGAAGA
GTTACTTGCTCGCGTTGAAGGCCTTGCAGGTCGTAACAAAGAAGGTGAAGACAAGACGCTGATAAAAGTAGGCGACCTCA
CTCTAGACCTAGTTAACCGCAAAGTATTGCGTGGCGATCAAGAGATCGACCTGCAGTCTAAAGAATTTCAATTGCTTGAA
TGCCTGCTCCGTCACAAGGGTAAAGTCGTGACGCGAAGCATGCTGCTTGAGCAGGTTTGGAACTATCATTTCGACCCGCA
AACGAATGTGATAGATGTTCACATTAGCCGCTTGCGTCAAAAAGTGGATAAGGCGTTTAATGTCCCGCTTATAGAGACTG
TGCGAGGCACAGGATATCGAATAGCGGATGGGCTTGCATGA

Protein sequence :
MKVLLVEDDPKVASHIANGLLGEGHECITVGDGTSGYQQASSNELDAVILDVMLPELDGFSVLEKLREEGNTTPVLLLSA
KSQVEDKVKGLRTGANDYLTKPFAFEELLARVEGLAGRNKEGEDKTLIKVGDLTLDLVNRKVLRGDQEIDLQSKEFQLLE
CLLRHKGKVVTRSMLLEQVWNYHFDPQTNVIDVHISRLRQKVDKAFNVPLIETVRGTGYRIADGLA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 5e-37 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 4e-36 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
AMEC673_14890 YP_006800037.1 response regulator consisting of a CheY-like receiver domain-containing protein and a winged-helix DNA-binding domain-containing protein BAC0308 Protein 2e-46 48
AMEC673_14890 YP_006800037.1 response regulator consisting of a CheY-like receiver domain-containing protein and a winged-helix DNA-binding domain-containing protein BAC0638 Protein 2e-44 48
AMEC673_14890 YP_006800037.1 response regulator consisting of a CheY-like receiver domain-containing protein and a winged-helix DNA-binding domain-containing protein BAC0083 Protein 2e-47 47
AMEC673_14890 YP_006800037.1 response regulator consisting of a CheY-like receiver domain-containing protein and a winged-helix DNA-binding domain-containing protein BAC0347 Protein 4e-46 47
AMEC673_14890 YP_006800037.1 response regulator consisting of a CheY-like receiver domain-containing protein and a winged-helix DNA-binding domain-containing protein BAC0111 Protein 6e-49 47
AMEC673_14890 YP_006800037.1 response regulator consisting of a CheY-like receiver domain-containing protein and a winged-helix DNA-binding domain-containing protein BAC0197 Protein 2e-46 46
AMEC673_14890 YP_006800037.1 response regulator consisting of a CheY-like receiver domain-containing protein and a winged-helix DNA-binding domain-containing protein BAC0125 Protein 1e-44 44
AMEC673_14890 YP_006800037.1 response regulator consisting of a CheY-like receiver domain-containing protein and a winged-helix DNA-binding domain-containing protein AE016830.1.gene1681. Protein 3e-40 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
AMEC673_14890 YP_006800037.1 response regulator consisting of a CheY-like receiver domain-containing protein and a winged-helix DNA-binding domain-containing protein VFG0596 Protein 2e-37 43
AMEC673_14890 YP_006800037.1 response regulator consisting of a CheY-like receiver domain-containing protein and a winged-helix DNA-binding domain-containing protein VFG1390 Protein 1e-38 42
AMEC673_14890 YP_006800037.1 response regulator consisting of a CheY-like receiver domain-containing protein and a winged-helix DNA-binding domain-containing protein VFG1389 Protein 6e-35 42