Gene Information

Name : iroC (SC2705)
Accession : YP_217692.1
Strain : Salmonella enterica SC-B67
Genome accession: NC_006905
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1132
EC number : -
Position : 2872255 - 2875911 bp
Length : 3657 bp
Strand : +
Note : IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter

DNA sequence :
ATGCCCGCGACTCATTCCCCCATGCCCGCTCGTGCCTGGATAGTTCGCCTTGCCCGCGTGTGTTGGGAACGTAAAACACT
GAGCATCATTGTCATCGTAGCATCAGTATCGACCATTTTACTGGCTGCGCTGACGCCGCTAATAACGCGTCAGGCCGTCA
ATGACGCGATAGCAGGCGATACGACCCACCTGCCGTTACTTGCCTGCGGCCTGCTGTTAATTGCCCTTTTTGATTTTATC
GGGAATTACGTGCGCCGCGGCTATGCCGGGGAACTCTCGTTGTGGGTTCAGCATACGTTACGTAGCCGTGCGTTCGACAG
TATTCAAAAACTGGACGGCGCAGGCCAGGACGCCTTACGTACCGGGCAGGTCATTTCGCGTACCAACAGCGATCTTCAAC
AGGTACACACCTTGCTACAAATGTGCCCGGTGCCGATGGCGGTACTCACTTACTATGTGGCCGGTATCGCGGTGATGCTA
TGGATGTCGCCATCCATGACGCTTATCGTGATTTGCGTACTGGCCGCCCTTGCCATTACCGCCCTGCGCGCCCGTCGCCG
TGTTTTCGCGCAAACGGGGCTTGCCTCAGACCGGCTGGCGCACATGACGGAACATATGCGCGAAGTATTGGAACAGATCT
CAGTGGTGAAGTCCTGCGTGGCGGAGTTACGCGAAACGCGTTGGCTCGATGGTCAGTCGCGGCAGATGGTGCGGGTACGC
ATCGGCGCCGCTATCTCGCAGGCGATGCCGGGCGCAACCATGCTGGCACTACCAGTGATAGGGCAAATCGTCCTGCTGTG
CTATGGCGGCTGGTCGGTAATGAATGGGCGCATCGATCTGGGAACCTTCGTTGCGTTCGCGAGTTTTCTCGCTATGCTGA
CCGGCCCTACCCGCGTACTGGCATCGTTTTTGGTTATCGCACAGCGCACACAGGCGTCGGTAGAGCGCGTCTTCGCGCTT
ATCGACACGCGTTCTCGCATGGAAGACGGTACTGAGTCGGTTGAGGGTCAGATTATCGGGCTGGACGTGGAGAAGATGAG
TTTCCACTACGACAACGGTAACCGTATCCTCAATGAGATCTCGTTTTCCATTCACGCCGGTGAAACCGTGGCGGTGGTTG
GCGCATCCGGCTCCGGGAAATCAACATTGCTGATGTTGCTGGCGCGCTTTTACGATCCCACCTCCGGCGGAGTATGGCTC
AACACCACTACGGGTCAACAGAATATTCGCGACCTGAAACTGACGGCGCTTCGTCGTCGCGTTGGCGTAGTTTTTGAAGA
CGCGTTTCTGTTTGCCGGTACGGTGGCGGAAAACATCGCCTATGGGCACCCGCAAGCGACTCAGGACGACATTCGACGCG
CCGCCGATGCCGCAGGCGCCAGCGGGTTCATCAATGCGCTACCGCAGGGGTTCAACACCCGACTGACCGAACGCGGAAGC
AACCTCTCCGGCGGCCAACGCCAGCGTATTGCGCTAGCCCGGGCACTGATTACCGCGCCGGAACTGCTGATTCTCGATGA
CACCACCTCGGCGGTCGATGCCGGTACTGAAGCGGAAATTAACACGGCTCTTGGTCGTTATGCCGATAATGAGCATATGC
TGCTGGTGATTGCACGCCGCCGTTCAACACTGCAGTTAGCCGATCGGATCGTCGTGCTGGATAAAGGCCGCGTCGTGGAT
ATCGGTACCCAGGCGGAGCTGGATGCAAGGTGTCCGACGTTTCGCTCGCTGATGAGCGGCGAGGGGGATTTTCTCGCCCT
TGCCCCGGCAGAACAACGTACGCTATGGCCAACAACGCAGGCGGTAAAATCCGACGACGCGCATGAGCGCCAGACACCCG
CCGGAAAAGGTTTTGTCGACCGGATGACGCGCGTTCCAGAACGCGCCGTACAGATGGCGCTGGCAGGCCACGGGCGTCAA
GTCTCATCGCTGCTGACGCCAGTAGCCTGGATGTTCGTCATCGCCGCCCTGCTTATCGCGCTTGATTCCGCCGCAGGCGT
TGGCGTGCTGGTGCTTTTGCAGCGCGGTATTGACTCAGGCGTTGCCGCAGGGGATATGTCGACTATTGGCATATGCGCTC
TGCTCGCGCTGTGTCTGGTGGCGATTGGTTGGTGCTGCTATGCGCTGCAAACGATCTTCGCCGCCCGCGCGGCAGAGTCG
GTACAGCATACGGTACGCTTACGCAGCTTTAGCCACCTGCTACGCCTGAGTCTTCCCTGGCACGAGAAGCACATCGACTC
GCGTCTTACTCGCATGACCGTCGATGTTGATTCACTCGCCCGATTTCTGCAAAACGGTCTTGCCAGCGCGGCCACCAGCA
TCGTGACAATGGTCGCTATCGCCGCGGCAATGTTCTGGCTTGACCCCATTCTTGCGTTAACGGCATTAAGCGCCGTGCCT
GTAGTGATGCTGGCGACGTGGATTTACCGCCGTTTGAGCTCGCCTGCCTACGCTCAGGCACGGCTGGAAATTGGTAAGGT
GAACAGTACGCTTCAGGAAAAGGTCTCCGGTATGCGGGTAGTACAGTCACACGGCCAACAGAAGCAGGAAGCCGCCAGGC
TACGGGCGTTATCAGATAACTTCCGCGCCACCCGCGTGCGGGCGCAAAAATACCTTGCCGTTTATTTTCCGTTCCTGACC
TTCTGCACCGAGGCCGCCTATGCCGCCGTGCTTTTAATCGGGGCGACCCGGGTCGCCGGAGGCGAAATGACGCCCGGGAT
ACTGGCGGCGTTCTTCCTGCTACTGGGACAATTTTATGGCCCGGTACAGCAGTTGTCAGGCATTGTTGATTCCTGGCAGC
AGGCGACCGCCAGCGGCAAACATATCAATGCGCTATTGGCGACTGAGGACACGGAGAATATTGAACCGTCCTCCATAACG
CCTGGCACTGGCGGCGCGCTACGTCTGGAGGCATTGACATTCCGCTATCCCGAAAAAACGCAACCTGTGCTTGATAAGCT
CTCGCTCACCATTCCGCCAGGAACTGTAGTCGCGGTGGTCGGACGTAGCGGCGCTGGCAAATCGACGTTGATCAAGCTGC
TGGCCGGACTCTACTCTCCCGGTAGCGGGCAAATCCGTGTCGGTGAGCGCCTAATTGATGCAGCGTCGCTTAGTGATTAT
CGTCGCCAGACGGGGCTGGTCACTCAGGATGTCGCATTATTTAGCGGCGATATTGCCGAAAATATCCGCTATCCGCGGCC
AAACAGCAGCGACACGGAGGTGGAGAGCGCGGCGCGACGGGCGGGACTCTTTGAAACTGTGCAACATCTGCCGCTGGGGT
TCCGTACTCCGGTCAATAACGGCGGCACGGATCTGTCCGCGGGCCAGCGTCAGTTGATTGCCCTCGCCCGCGCCCACCTG
GCGCAGGCGCATATTCTGCTGCTCGACGAGGCGACAGCGCGTATCGACCGTAGCGCCGAGGAGCGCTTAATGACCTCGCT
TACCAGGGTGACGCATACCGAGAAACGCATCGCGCTTATCGTCGCGCACCGGCTGACCACCGCTCGCCGTTGCGATGTTA
TTGTCGTAATCGATAAAGGATGTATCGCTGAATATGGCAGCCATGAGCAGTTGATAGCGACTCATGGCCTGTATGCTCGT
CTGTGGCGGGACAGCATCGGCCAGACACGCGATACGCAAGGAGAGGTCATAGGATAG

Protein sequence :
MPATHSPMPARAWIVRLARVCWERKTLSIIVIVASVSTILLAALTPLITRQAVNDAIAGDTTHLPLLACGLLLIALFDFI
GNYVRRGYAGELSLWVQHTLRSRAFDSIQKLDGAGQDALRTGQVISRTNSDLQQVHTLLQMCPVPMAVLTYYVAGIAVML
WMSPSMTLIVICVLAALAITALRARRRVFAQTGLASDRLAHMTEHMREVLEQISVVKSCVAELRETRWLDGQSRQMVRVR
IGAAISQAMPGATMLALPVIGQIVLLCYGGWSVMNGRIDLGTFVAFASFLAMLTGPTRVLASFLVIAQRTQASVERVFAL
IDTRSRMEDGTESVEGQIIGLDVEKMSFHYDNGNRILNEISFSIHAGETVAVVGASGSGKSTLLMLLARFYDPTSGGVWL
NTTTGQQNIRDLKLTALRRRVGVVFEDAFLFAGTVAENIAYGHPQATQDDIRRAADAAGASGFINALPQGFNTRLTERGS
NLSGGQRQRIALARALITAPELLILDDTTSAVDAGTEAEINTALGRYADNEHMLLVIARRRSTLQLADRIVVLDKGRVVD
IGTQAELDARCPTFRSLMSGEGDFLALAPAEQRTLWPTTQAVKSDDAHERQTPAGKGFVDRMTRVPERAVQMALAGHGRQ
VSSLLTPVAWMFVIAALLIALDSAAGVGVLVLLQRGIDSGVAAGDMSTIGICALLALCLVAIGWCCYALQTIFAARAAES
VQHTVRLRSFSHLLRLSLPWHEKHIDSRLTRMTVDVDSLARFLQNGLASAATSIVTMVAIAAAMFWLDPILALTALSAVP
VVMLATWIYRRLSSPAYAQARLEIGKVNSTLQEKVSGMRVVQSHGQQKQEAARLRALSDNFRATRVRAQKYLAVYFPFLT
FCTEAAYAAVLLIGATRVAGGEMTPGILAAFFLLLGQFYGPVQQLSGIVDSWQQATASGKHINALLATEDTENIEPSSIT
PGTGGALRLEALTFRYPEKTQPVLDKLSLTIPPGTVVAVVGRSGAGKSTLIKLLAGLYSPGSGQIRVGERLIDAASLSDY
RRQTGLVTQDVALFSGDIAENIRYPRPNSSDTEVESAARRAGLFETVQHLPLGFRTPVNNGGTDLSAGQRQLIALARAHL
AQAHILLLDEATARIDRSAEERLMTSLTRVTHTEKRIALIVAHRLTTARRCDVIVVIDKGCIAEYGSHEQLIATHGLYAR
LWRDSIGQTRDTQGEVIG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iroC CAC43427.2 ABC transport protein Virulence PAI III 536 Protein 0.0 80

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
iroC YP_217692.1 ABC transporter VFG1653 Protein 0.0 80