Gene Information

Name : insD1 (b2860)
Accession : NP_417337.1
Strain : Escherichia coli K12
Genome accession: NC_000913
Putative virulence/resistance : Unknown
Product : IS2 transposase TnpB
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 2996372 - 2997277 bp
Length : 906 bp
Strand : -
Note : -

DNA sequence :
GTGGATAGCGCACGCGCCCTTATTGCCCGGGGATGGGGAGTAAGCTTAGTCAGCCGTTGTCTCCGGGTGTCGCGTGCGCA
GTTGCACGTCATTCTCAGACGAACCGATGACTGGATGGATGGCCGCCGCAGTCGTCACACTGATGATACGGATGTGCTTC
TCCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCAGAA
CTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCTTGAGCGAAAACC
TGCTGTACCGCCATCGAAACGGGCACATACAGGCAGAGTGGCCGTGAAAGAAAGCAATCAGCGATGGTGCTCTGACGGGT
TCGAGTTCTGCTGTGATAACGGAGAGAGACTGCGTGTCACGTTCGCGCTGGACTGCTGTGATCGTGAGGCACTGCACTGG
GCGGTCACTACCGGCGGCTTCAACAGTGAAACAGTACAGGACGTCATGCTGGGAGCGGTGGAACGCCGCTTCGGCAACGA
TCTTCCGTCGTCTCCAGTGGAGTGGCTGACGGATAATGGTTCATGCTACCGGGCTAATGAAACACGCCAGTTCGCCCGGA
TGTTGGGACTTGAACCGAAGAACACGGCGGTGCGGAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATA
AAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTA
TAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAA
GTGATAACAGATGTCTGGAAATATAG

Protein sequence :
MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAE
LDGMPAINAKRVYRIMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHW
AVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTI
KRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
S4061 NP_839230.2 insertion element IS2 transposase InsD Not tested SHI-2 Protein 7e-140 100
tnpF AAD44739.1 TnpF Not tested SHI-2 Protein 8e-122 99
SF3708 NP_709447.1 IS2 transposase TnpB Not tested SHI-2 Protein 2e-139 99
SF3721 NP_709460.1 IS2 transposase TnpB Not tested SHI-2 Protein 2e-139 99
S3189 NP_838472.2 insertion element IS2 transposase InsD Not tested SHI-1 Protein 3e-138 99
S4050 NP_839218.2 insertion element IS2 transposase InsD Not tested SHI-2 Protein 2e-139 99
SF2985 NP_708759.1 insertion element IS2 transposase InsD Not tested SHI-1 Protein 6e-120 99
insD YP_002414033.1 insertion element IS2 transposase InsD Not tested Not named Protein 3e-136 98
unnamed AAL67379.1 transposase-like protein Not tested PAI II CFT073 Protein 1e-118 97
unnamed CAC39284.1 hypothetical protein Not tested LPA Protein 3e-119 97
ECO111_3773 YP_003236109.1 putative IS2 transposase InsAB Not tested LEE Protein 2e-120 94
aec49 AAW51732.1 Aec49 Not tested AGI-3 Protein 9e-122 84
unnamed CAC39283.1 hypothetical protein Not tested LPA Protein 5e-84 63
c5197 NP_757045.1 transposase insD Not tested PAI II CFT073 Protein 1e-61 60
insD YP_854263.1 IS2 transposase Not tested PAI I APEC-O1 Protein 2e-65 60
insD AAZ04432.1 IS2 transposase Not tested PAI I APEC-O1 Protein 2e-65 60

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
insD1 NP_417337.1 IS2 transposase TnpB VFG0621 Protein 7e-140 99
insD1 NP_417337.1 IS2 transposase TnpB VFG0608 Protein 7e-140 99
insD1 NP_417337.1 IS2 transposase TnpB VFG0649 Protein 3e-120 99
insD1 NP_417337.1 IS2 transposase TnpB VFG1732 Protein 1e-136 98