Gene Information

Name : H045_01525 (H045_01525)
Accession : YP_007395877.1
Strain : Pseudomonas poae RE*1-1-14
Genome accession: NC_020209
Putative virulence/resistance : Virulence
Product : DNA-binding heavy metal response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 327104 - 327781 bp
Length : 678 bp
Strand : -
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence :
ATGCGCGTCCTGATTATCGAAGATGAAGAAAAAACCGCAGACTACCTGCATCGCGGCCTCACCGAGCAAGGCTACACCGT
CGACGTGGCGCGCGAGGGCGTCGAGGGGTTACACCTGGCGCTGGAGAACGACTACGCGGTGATCGTGCTCGATGTGATGC
TGCCCGGCCTCGACGGCTTCGGCGTGCTGCGGGCGTTGCGCGCGCGCAAGCAGACGCCGGTCATCATGCTCACTGCCCGC
GAACGCGTGGAAGACCGCATTCGCGGCCTGCGCGAAGGCGCCGATGATTACCTGGGCAAGCCGTTTTCATTTCTAGAGCT
GGTTGCACGCCTGCAGGCGCTGACCCGGCGCAGCGGTGGTCACGAGCCGGTACAGGTGACGGTCGCCGACCTGTGGATCG
ACCTGATCAGCCGCAAGGCCAGCCGCAATGGCGTGCGCCTGGACCTTACCGCCAAGGAGTTTTCGCTGCTCAGCGTATTG
GCCCGCCGCCAGGGCGAAATCCTCTCCAAGACGGCGATTGCCGAGATGGTCTGGGACATCAATTTCGACAGCGACGCCAA
CGTGGTCGAAGTGGCGATCAAACGTCTGCGCGCCAAGCTCGACGGGCCGTTCGAACACAAGCTGCTGCACACCATTCGCG
GTATGGGGTACGTGTTGGAGAATCGCAGTGTCGGTTGA

Protein sequence :
MRVLIIEDEEKTADYLHRGLTEQGYTVDVAREGVEGLHLALENDYAVIVLDVMLPGLDGFGVLRALRARKQTPVIMLTAR
ERVEDRIRGLREGADDYLGKPFSFLELVARLQALTRRSGGHEPVQVTVADLWIDLISRKASRNGVRLDLTAKEFSLLSVL
ARRQGEILSKTAIAEMVWDINFDSDANVVEVAIKRLRAKLDGPFEHKLLHTIRGMGYVLENRSVG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 5e-56 57
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-55 57

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
H045_01525 YP_007395877.1 DNA-binding heavy metal response regulator BAC0197 Protein 1e-58 56
H045_01525 YP_007395877.1 DNA-binding heavy metal response regulator BAC0125 Protein 9e-63 56
H045_01525 YP_007395877.1 DNA-binding heavy metal response regulator BAC0083 Protein 3e-57 55
H045_01525 YP_007395877.1 DNA-binding heavy metal response regulator BAC0638 Protein 1e-50 54
H045_01525 YP_007395877.1 DNA-binding heavy metal response regulator BAC0111 Protein 2e-57 53
H045_01525 YP_007395877.1 DNA-binding heavy metal response regulator BAC0308 Protein 2e-54 50
H045_01525 YP_007395877.1 DNA-binding heavy metal response regulator BAC0347 Protein 1e-51 50
H045_01525 YP_007395877.1 DNA-binding heavy metal response regulator HE999704.1.gene1528. Protein 1e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
H045_01525 YP_007395877.1 DNA-binding heavy metal response regulator VFG0596 Protein 2e-56 57
H045_01525 YP_007395877.1 DNA-binding heavy metal response regulator VFG1389 Protein 2e-39 48
H045_01525 YP_007395877.1 DNA-binding heavy metal response regulator VFG1386 Protein 2e-35 44
H045_01525 YP_007395877.1 DNA-binding heavy metal response regulator VFG1390 Protein 3e-39 41