Gene Information

Name : MADE_1001535 (MADE_1001535)
Accession : YP_004425454.1
Strain : Alteromonas macleodii Deep ecotype
Genome accession: NC_011138
Putative virulence/resistance : Virulence
Product : XRE family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 343059 - 343742 bp
Length : 684 bp
Strand : -
Note : Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence : 
ATGAAAATACTTGTAGTCGAAGACGAAGTAAAAACGGGCGATTACATCAAACAAGGGCTCATTGAATCCGGCTTTGTTGT
AGAATTAGTAAGGACTGGCCTGGATGGTCACCACAAATCGATGATTGGTGATTATGAATTAATCGTACTCGATGTAATGC
TGCCCGACATAGAAGGTTGGAAAATCCTGTCTTCATTGAGAGAATCTGGTAAATTTACACCCGTTCTTTTTTTAACCGCT
CGCGATCACGTTAATGACAGAGTCAAAGGACTTGAGTTAGGCGCAGACGATTATTTGGTTAAACCGTTTGCTTTCGCGGA
ACTCCTCGCAAGAGTGCGCACCTTGATCAGGAGAGGGACGTCTGTCCCTAACAACACGTTACACATTGCAGATTTGGAGC
TTGATATCCCTTCTCGCGTTGCGAAGCGCGGTGGCAAAGTAATCAATCTGACGACTAAAGAGTTTACATTGCTTGAACTA
ATGGTCAGACGTCAAGGTGAAGTATTGCCCCGTTCTTTGATCGCCTCTCAGGTATGGGACATGAATTTTGACAGTGACAC
GAATGTCATTGATGTCGCTATCCGAAGATTGCGCGCAAAAATTGATGATGACTTTCCTGTAAAGCTAATTCAAACTGTCA
GGGGGATGGGCTATAAAATGAGTGTAGATGATAGTAACGAATAA

Protein sequence : 
MKILVVEDEVKTGDYIKQGLIESGFVVELVRTGLDGHHKSMIGDYELIVLDVMLPDIEGWKILSSLRESGKFTPVLFLTA
RDHVNDRVKGLELGADDYLVKPFAFAELLARVRTLIRRGTSVPNNTLHIADLELDIPSRVAKRGGKVINLTTKEFTLLEL
MVRRQGEVLPRSLIASQVWDMNFDSDTNVIDVAIRRLRAKIDDDFPVKLIQTVRGMGYKMSVDDSNE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-58 55
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 5e-58 53

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MADE_1001535 YP_004425454.1 XRE family transcriptional regulator BAC0111 Protein 5e-71 65
MADE_1001535 YP_004425454.1 XRE family transcriptional regulator BAC0083 Protein 4e-71 65
MADE_1001535 YP_004425454.1 XRE family transcriptional regulator BAC0638 Protein 4e-63 64
MADE_1001535 YP_004425454.1 XRE family transcriptional regulator BAC0308 Protein 7e-66 62
MADE_1001535 YP_004425454.1 XRE family transcriptional regulator BAC0197 Protein 7e-68 61
MADE_1001535 YP_004425454.1 XRE family transcriptional regulator BAC0347 Protein 8e-65 59
MADE_1001535 YP_004425454.1 XRE family transcriptional regulator BAC0125 Protein 2e-63 59

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MADE_1001535 YP_004425454.1 XRE family transcriptional regulator VFG0596 Protein 7e-59 55
MADE_1001535 YP_004425454.1 XRE family transcriptional regulator VFG1390 Protein 4e-38 41