Gene Information

Name : SEEH1578_16325 (SEEH1578_16325)
Accession : YP_008247324.1
Strain : Salmonella enterica 41578
Genome accession: NC_021810
Putative virulence/resistance : Virulence
Product : type III secretion system protein SsaQ
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3292533 - 3293501 bp
Length : 969 bp
Strand : +
Note : COG1886 Flagellar motor switch/type III secretory pathway protein

DNA sequence :
ATGTTAAGAATAGCGAATGAAGAGCGTCCGTGGGTGGAGATACTTCCAACGCAAGGCGCTACCATTGGTGAGCTGACATT
GAGTATGCAACAATATCCAGTACAGCAAGGGACATTATTTACCATAAATTATCATAATGAGCTGGGTAGGGTGTGGATTG
CAGAACAATGCTGGCAGCGCTGGTGTGAAGGGCTAATTGGCACCGCTAATCGATCGGCTATCGATCCTGAATTGCTATAT
GGAATAGCTGAATGGGGGCTGGCGCCGTTATTGCAAGCCAGTGATGCAACCCTCTGTCAGAACGAACCGCCAACATCCTG
CAGTAATCTACCACATCAGCTAGCGTTGCATATTAAATGGACAGTTGAAGAACATGAGTTCCATAGCATTATTTTTACAT
GGCCAACGGGTTTTTTGCGCAATATAGTCGGAGAGCTTTCTGCTGAGCGACAACAGATTTATCCTGCCCCTCCTGTAGTA
GTCCCTGTATATTTAGGCTGGTGCCAGCTTACGTTAATTGAACTTGAGTCTATCGAAATCGGCATGGGCGTTCGGATTCA
TTGCTTTGGCGACATCAGACTCGGTTTTTTTGCTATTCAACTACCTGGGGGGATCTACGCGAGGGTGTTGCTGACAGAGG
ATAACACGATGAAATTTGATGAATTAGTCCAGGATATCGAAACGCTACTTGCGTCAGGGAGTCCAATGTCAAAGAGTGAC
GGAACATCTTCAGTAGAACTTGAGCAGATACCACAACAGGTGCTCTTTGAGATCGGACGTGCGAGTCTGGAAATTGGACA
ATTACGACAGCTTAAAACGGGGGACGTTTTGCCTGTAGGTGGATGTTTTGCGCCAGAGGTGACGATAAGAGTAAATGACC
GTATTATTGGGCAAGGTGAGTTGATTGCCTGTGGCAATGAATTTATGGTGCGTATTACACGTTGGTATCTTTGCAAAAAT
ACAGCGTAA

Protein sequence :
MLRIANEERPWVEILPTQGATIGELTLSMQQYPVQQGTLFTINYHNELGRVWIAEQCWQRWCEGLIGTANRSAIDPELLY
GIAEWGLAPLLQASDATLCQNEPPTSCSNLPHQLALHIKWTVEEHEFHSIIFTWPTGFLRNIVGELSAERQQIYPAPPVV
VPVYLGWCQLTLIELESIEIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMSKSD
GTSSVELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACGNEFMVRITRWYLCKN
TA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaQ YP_216426.1 type III secretion system protein Virulence SPI-2 Protein 2e-143 99
ssaQ CAA70540.1 secretion system apparatus Virulence SPI-2 Protein 4e-98 99
ssaQ NP_460383.1 type III secretion system protein Virulence SPI-2 Protein 6e-143 99
ssaQ NP_456110.1 putative type III secretion protein Virulence SPI-2 Protein 5e-143 99
ssaQ NP_805089.1 type III secretion system protein Virulence SPI-2 Protein 5e-143 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SEEH1578_16325 YP_008247324.1 type III secretion system protein SsaQ VFG0518 Protein 3e-143 99