Gene Information

Name : CFSAN001921_16060 (CFSAN001921_16060)
Accession : YP_008256558.1
Strain : Salmonella enterica CFSAN001921
Genome accession: NC_021814
Putative virulence/resistance : Virulence
Product : type VI secretion protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3258260 - 3260143 bp
Length : 1884 bp
Strand : +
Note : Derived by automated computational analysis using gene prediction method: GeneMarkS+.

DNA sequence :
ATGGATCCACGGCTACTGGAGTATTACAACCGCGAACTGAGCTACCTGCGGGAGACCGGTGCTGAGTTCGCCACCCTCCA
TCCCAAAATTGCCGCCCGACTGGGGATGCAGGGAACCGATATTGCCGACCCGTATGTGGAACGCATGATCGAGGCGTTCA
GCTTTCTGAGCGCCCGCACTCAGCTAAAAATTGACGCCGAGTTTCCCCGCTTCACACAGCGGTTACTGGAAGTCGTCAGC
CCCAATTACGTCACCCCCACGCCATCGATGGCAGTGGTAAAGCTGTATCCCGATACGCAGGAAGGCGACCTGGCGAAAGG
GGTCACCGTGCCGCGCGATACCGCGTTCGTTTCCCCCATCCCGGAAGGCGAAAATACCGCCTGCCAGTTTCGCAGCAGCC
AGGACGTCACGCTGTGGCCGCTGTCCATCGAGGAGGTACGCCTGACCGCCGCGCCGCCGGATATGCCCGCCCTGCACCGC
TATCTGCCGCCTAATATTCATGTCGCCGGGGCATTGCGCATCACCCTGCGAACCTTCGGGGAACTGACTTTCAGCGAGCT
GGCCGGTCCGGCACGGCTGCCCTTTTACCTCTGCGGCGAAGAACGCATTGCGTCACACCTGTTTGAGCTGCTACATACCA
GCGCCGTCGCCACACTGGCCGGTGAACCCGGTCACTTTGACGGCGAACTGAATGTGAATCTTCAACACCCGGTGGCGCAC
GAAGGGCTGGAGCCAGGGCAGGGGCTGCTACCGCTCGCCTGGAACGTGTTTCACGGCCATAATCTGCTGCATGAATTTTT
CGCCTGTCCGGAACGGTTTTACTTCTTCACCCCGACCGGATTGTCTGCCGGGTTACAAAAGGTGCAGGGCAATGTGGCGG
AAATTGTCATACTGCTTAACCGCCTGCCGCCGGACTGGCTGATTCATCAGACGGACGCTGCACAGTTCAGCCTGTTCTGT
ACGCCGGTGATCAACCTGTTTCCTCGCACCACCACCCGGATTGAAGTCACTCACAGCGTGACGGAACAGCATCTGGTGGT
GGATCGTACCCGTCCGCTGGATTACGAGGTGTTTTCTGTTCAGGAAGTCGAAGGCCTGGAAGCGGAAACCACACGGAAGA
TGATTTTTCGTCCGCTGTATCACACCCGTAATAATGACGAAGGCAACCACGGGCGTTATTTTTCACTGCGTCGTGAACCG
CGCCGCTCGTCAGAAAACGCCCGCCGCTATGGCACCCGAACCCCCTATACCGGCTCGGAAGTCTTCCTCTCGCTGGTTGA
TCAGCATGAAGCGCCCTACCCGGAAAATCTGCGCCATATCACCGTCACGGCAATGGTGACTAACCGCGATCTGCCCTGCC
TTATTCCACGTAATGGCCGGGATGATCTGACCGTAGATGCGGCGATTCCGGTGGCGGGCGTGGGTCTTATCAGACCGCCG
CGCCCGCCGCAGCCGCCGCTGGCTGAACGCGAAATGGCCTGGCGGCTGATCCGGCAGTTGTCGTTTAATTATCTGCCGCT
GGCCGATCTGGATCACCGCACCGGCGGCCAGGCGCTGCGCGATCTGCTGAATCTGTTTATCCCGGCTCACGACAGCCCGC
AGTCGCGCCAGGTGCGCAGCCTGATTGGCTGCAAAACCACCCCGGTGACCCGCCGCCTGCCCGGCTCCGGCCTGTTGGTC
TATGGCCGGGGCGTCAGTTGCGAACTGACCGTGGACGAAGAAGGATTTTCCGGTATCAGTCCTTACCTGTTCGGTCTGGT
GCTGGAACACTATATTGCCCGCCATGTTTCCATTAATACCTTCTCGCAGATGACGCTGCACTCGATGCAACGCGGGCATG
TCATGACCTGGCCGGTCAGAACCGGGCAACGGGGGAGCGTATGA

Protein sequence :
MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSARTQLKIDAEFPRFTQRLLEVVS
PNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPIPEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHR
YLPPNIHVAGALRITLRTFGELTFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH
EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLNRLPPDWLIHQTDAAQFSLFC
TPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREP
RRSSENARRYGTRTPYTGSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP
RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRSLIGCKTTPVTRRLPGSGLLV
YGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINTFSQMTLHSMQRGHVMTWPVRTGQRGSV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0289 NP_454871.1 hypothetical protein Not tested SPI-6 Protein 0.0 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CFSAN001921_16060 YP_008256558.1 type VI secretion protein VFG2074 Protein 5e-114 41