Gene Information

Name : HYPDE_39203 (HYPDE_39203)
Accession : YP_007916009.1
Strain : Hyphomicrobium denitrificans 1NES1
Genome accession: NC_021172
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3301409 - 3302086 bp
Length : 678 bp
Strand : -
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence :
ATGCGAATCTTGCTGCTTGAGGATGATGCCAATACGGCGGCCTACGTTTCGAAGGGCCTCGAGGAAGAAGGTCACACCGT
CGATCACCTGGCCGACGGTCGCGACGCCGTCGCACAGGCCATAGGCGAAGATTACGACGTCATCATTCTCGATCGCATGC
TGCCGGGTCTCGATGGCTTGGCGATCATCAAGACCATTCGCAGCGCCGGACGCCGGGTGCCGGTGCTGTTCCTGACGGCG
CTTGGCGGTGTCGACGACCGTGTCGAGGGTCTCGATGCGGGCGGTGACGACTATCTCGTCAAACCTTTTGCTTTTTCGGA
GCTGCTCGCGCGCGTCAATGCGCTCGCGCGTCGTCCGCATACCAAAGGCGAGGAGACGAGGCTCAAGGTCGGCGATCTGG
AGATTGACCTCGTCAGCCGCAAGGTGACGCGCGGCGGCGATATGATCGATCTGCAGCCGCGCGAGTTCCGGTTGCTCGAA
GTCCTCATGCGTAACCGCGGTCGTGTCGTGACGCGGACGATGCTGCTCGAGCGCGTGTGGAGTTTCCATTTCGATCCCAA
GACAAGCGTCGTCGAAACGCACATCTCGCGTCTCCGTGCAAAGATCGATAAGCCCTATGGCAAGGAGCTCATTCATACGA
TCCGCGGCAGCGGCTACACCGTGAACGATGGTGCTTGA

Protein sequence :
MRILLLEDDANTAAYVSKGLEEEGHTVDHLADGRDAVAQAIGEDYDVIILDRMLPGLDGLAIIKTIRSAGRRVPVLFLTA
LGGVDDRVEGLDAGGDDYLVKPFAFSELLARVNALARRPHTKGEETRLKVGDLEIDLVSRKVTRGGDMIDLQPREFRLLE
VLMRNRGRVVTRTMLLERVWSFHFDPKTSVVETHISRLRAKIDKPYGKELIHTIRGSGYTVNDGA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-45 47
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-44 46
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 2e-33 42
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 1e-32 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HYPDE_39203 YP_007916009.1 winged helix family two component transcriptional regulator BAC0083 Protein 2e-57 53
HYPDE_39203 YP_007916009.1 winged helix family two component transcriptional regulator BAC0125 Protein 1e-54 52
HYPDE_39203 YP_007916009.1 winged helix family two component transcriptional regulator BAC0347 Protein 7e-54 50
HYPDE_39203 YP_007916009.1 winged helix family two component transcriptional regulator BAC0197 Protein 1e-50 49
HYPDE_39203 YP_007916009.1 winged helix family two component transcriptional regulator BAC0638 Protein 9e-51 49
HYPDE_39203 YP_007916009.1 winged helix family two component transcriptional regulator BAC0111 Protein 2e-53 47
HYPDE_39203 YP_007916009.1 winged helix family two component transcriptional regulator BAC0308 Protein 2e-49 45
HYPDE_39203 YP_007916009.1 winged helix family two component transcriptional regulator AE000516.2.gene3505. Protein 3e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HYPDE_39203 YP_007916009.1 winged helix family two component transcriptional regulator VFG0596 Protein 5e-46 47
HYPDE_39203 YP_007916009.1 winged helix family two component transcriptional regulator VFG1390 Protein 6e-39 42
HYPDE_39203 YP_007916009.1 winged helix family two component transcriptional regulator VFG1702 Protein 7e-34 42
HYPDE_39203 YP_007916009.1 winged helix family two component transcriptional regulator VFG1389 Protein 2e-35 42
HYPDE_39203 YP_007916009.1 winged helix family two component transcriptional regulator VFG1563 Protein 6e-33 41