Gene Information

Name : Riv7116_3368 (Riv7116_3368)
Accession : YP_007056374.1
Strain : Rivularia sp. PCC 7116
Genome accession: NC_019678
Putative virulence/resistance : Virulence
Product : response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4189387 - 4190070 bp
Length : 684 bp
Strand : +
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal

DNA sequence :
GTGAATGTTCTATTTGTCGAAGATGAAGCAAAAATTGCTGACTTTGTTCGGGCTGGACTAAAGGAGCAAGGGTTTACTGT
AGATTACTGCGATAATGGGAATGAAGGTTGTTTACTAGCCTTAGAAAACGAATATGATGCAATTATTTTGGATATTATGG
TTCCTGGAAAAGACGGGCTATCAATTCTCAAACAATTGCGTCAAAAAGGTAAGAATACTCCGGTAATTTTATTAACGGCT
CGGAATGAACTTGATGATAGATTACAAGGGTTGAACTTGGGTGCTGATGATTACATTGCCAAACCTTTCTTTGTGGAAGA
ATTAGTTGCTCGCATCCATGCTGTTATCCGTCGTACTGTGGGAGAGCGGCAAAATTATATTGCTGTGGGAGCTTTAAAAT
TAGATAGAATTACTAGGGAAGTTACTTGCAATCAAAAAGCGATTGAGCTTACCACTCGCGAGTTTAATCTTCTAGAATAT
TTGATGCGATCGCCAGAAAGAGTTTTTACCAGAACCCAAATATTAGAGCATGTTTGGGGTTATGATTTTAATCCAAATAC
CAATGTTGTAGACGTTTGTATCCAGCGGATTCGGAAAAAAATTGACCCTATTAACAAGGGAGAATGGATTGAAAGTATTC
GCGGAGTTGGTTATCGCTTTCGTCAAGCAGATACTCATTCATGA

Protein sequence :
MNVLFVEDEAKIADFVRAGLKEQGFTVDYCDNGNEGCLLALENEYDAIILDIMVPGKDGLSILKQLRQKGKNTPVILLTA
RNELDDRLQGLNLGADDYIAKPFFVEELVARIHAVIRRTVGERQNYIAVGALKLDRITREVTCNQKAIELTTREFNLLEY
LMRSPERVFTRTQILEHVWGYDFNPNTNVVDVCIQRIRKKIDPINKGEWIESIRGVGYRFRQADTHS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-39 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-38 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Riv7116_3368 YP_007056374.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AE015929.1.gene1106. Protein 1e-34 45
Riv7116_3368 YP_007056374.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0125 Protein 2e-42 45
Riv7116_3368 YP_007056374.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0197 Protein 2e-42 45
Riv7116_3368 YP_007056374.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_010079.5776364.p0 Protein 3e-37 44
Riv7116_3368 YP_007056374.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002952.2859858.p0 Protein 3e-37 44
Riv7116_3368 YP_007056374.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007622.3794948.p0 Protein 3e-37 44
Riv7116_3368 YP_007056374.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_003923.1003417.p0 Protein 3e-37 44
Riv7116_3368 YP_007056374.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_013450.8614146.p0 Protein 3e-37 44
Riv7116_3368 YP_007056374.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002951.3238224.p0 Protein 3e-37 44
Riv7116_3368 YP_007056374.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007793.3914065.p0 Protein 3e-37 44
Riv7116_3368 YP_007056374.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002758.1121390.p0 Protein 3e-37 44
Riv7116_3368 YP_007056374.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0347 Protein 1e-40 42
Riv7116_3368 YP_007056374.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0111 Protein 2e-44 42
Riv7116_3368 YP_007056374.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0083 Protein 6e-43 42
Riv7116_3368 YP_007056374.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_012469.1.7686381. Protein 1e-37 42
Riv7116_3368 YP_007056374.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0638 Protein 3e-37 42
Riv7116_3368 YP_007056374.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AE016830.1.gene1681. Protein 6e-41 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Riv7116_3368 YP_007056374.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1389 Protein 3e-35 44
Riv7116_3368 YP_007056374.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG0596 Protein 4e-40 43