|
Name : RUM_03870 (RUM_03870) Accession : YP_007828630.1 Strain : Ruminococcus champanellensis 18P13 Genome accession: NC_021039 Putative virulence/resistance : Resistance Product : Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Function : - COG functional category : - COG ID : - EC number : - Position : 428321 - 429004 bp Length : 684 bp Strand : - Note : - DNA sequence : ATGATTTACTTGCTGGAGGATGACAACAGCATCCGGGAGCTTGTTACCTATTCGCTGAACAATTCCGGGCTGGAAACCAG GGGCTTTGAAAAGCCCTCGGATTTCTGGCGGGGCATGGAACAGGAGCAGCCGGATCTGGTACTGCTGGATATTATGCTGC CGGAGGAGGACGGGCTTTCGATTCTCAAAAAGCTCCGGAGCAATCCCCCCACCCGGAAGCTGCCCATTCTGATGCTGACC GCCAAGGGCAGCGAATACGACAAGGTCATCGGTCTGGACTGCGGTGCCGACGACTACGTCCCCAAGCCCTTCGGCATGAT GGAGCTGATCGCCAGGGTCAAGGCGCTGCTGCGCCGGACGGAGCGAAAGGATCCCCAGCCGGAGCATACCATCCGGGGGC TGTATGTGTGCCCGGCAAAGCACATCGTCACCGTGGACGGGGAACCGGTGTCCCTGACCCTCAAGGAGTTTGAGATGCTG TGCGTATTCCTGGAAAACCGGAACGTGGTGCTGACCCGGGATCAACTGCTCAACAAGGTGTGGGGCTATGCCTTTGACGG GGAGAGCCGGACGGTGGACGTACACATCCGTTCCCTGCGGCAGAAGCTGGGAGAGTATGCGGATGTGATCGAAACCGTCC GGGGCATCGGCTATAAGCTCAGCGAGCCGGAGGGGGCACGATGA Protein sequence : MIYLLEDDNSIRELVTYSLNNSGLETRGFEKPSDFWRGMEQEQPDLVLLDIMLPEEDGLSILKKLRSNPPTRKLPILMLT AKGSEYDKVIGLDCGADDYVPKPFGMMELIARVKALLRRTERKDPQPEHTIRGLYVCPAKHIVTVDGEPVSLTLKEFEML CVFLENRNVVLTRDQLLNKVWGYAFDGESRTVDVHIRSLRQKLGEYADVIETVRGIGYKLSEPEGAR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| vanRB | NP_815956.1 | DNA-binding response regulator VanRB | Not tested | Not named | Protein | 5e-29 | 43 |
| copR | NP_460069.2 | transcriptional regulatory protein YedW | Not tested | SPI-5 | Protein | 3e-26 | 42 |
| copR | AAC33719.1 | regulatory protein CopR | Not tested | SPI-5 | Protein | 1e-25 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| RUM_03870 | YP_007828630.1 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | NC_007622.3794948.p0 | Protein | 3e-34 | 48 |
| RUM_03870 | YP_007828630.1 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | NC_003923.1003417.p0 | Protein | 3e-34 | 48 |
| RUM_03870 | YP_007828630.1 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | NC_013450.8614146.p0 | Protein | 3e-34 | 48 |
| RUM_03870 | YP_007828630.1 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | NC_002951.3238224.p0 | Protein | 3e-34 | 48 |
| RUM_03870 | YP_007828630.1 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | NC_007793.3914065.p0 | Protein | 3e-34 | 48 |
| RUM_03870 | YP_007828630.1 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | NC_002758.1121390.p0 | Protein | 3e-34 | 48 |
| RUM_03870 | YP_007828630.1 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | NC_010079.5776364.p0 | Protein | 3e-34 | 48 |
| RUM_03870 | YP_007828630.1 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | NC_002952.2859858.p0 | Protein | 3e-34 | 48 |
| RUM_03870 | YP_007828630.1 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | AE015929.1.gene1106. | Protein | 2e-29 | 47 |
| RUM_03870 | YP_007828630.1 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | NC_002952.2859905.p0 | Protein | 3e-38 | 44 |
| RUM_03870 | YP_007828630.1 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | NC_013450.8614421.p0 | Protein | 4e-38 | 44 |
| RUM_03870 | YP_007828630.1 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | NC_007793.3914279.p0 | Protein | 4e-38 | 44 |
| RUM_03870 | YP_007828630.1 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | NC_002745.1124361.p0 | Protein | 4e-38 | 44 |
| RUM_03870 | YP_007828630.1 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | NC_009782.5559369.p0 | Protein | 4e-38 | 44 |
| RUM_03870 | YP_007828630.1 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | NC_002951.3237708.p0 | Protein | 4e-38 | 44 |
| RUM_03870 | YP_007828630.1 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | NC_003923.1003749.p0 | Protein | 3e-38 | 44 |
| RUM_03870 | YP_007828630.1 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | NC_002758.1121668.p0 | Protein | 4e-38 | 44 |
| RUM_03870 | YP_007828630.1 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | NC_007622.3794472.p0 | Protein | 3e-38 | 44 |
| RUM_03870 | YP_007828630.1 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | NC_009641.5332272.p0 | Protein | 4e-38 | 44 |
| RUM_03870 | YP_007828630.1 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | AE016830.1.gene2255. | Protein | 2e-29 | 43 |
| RUM_03870 | YP_007828630.1 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | U35369.1.gene1.p01 | Protein | 2e-29 | 43 |
| RUM_03870 | YP_007828630.1 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | NC_012469.1.7685629. | Protein | 1e-37 | 42 |
| RUM_03870 | YP_007828630.1 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | HE999704.1.gene2815. | Protein | 2e-35 | 42 |
| RUM_03870 | YP_007828630.1 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | NC_012469.1.7686381. | Protein | 3e-35 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| RUM_03870 | YP_007828630.1 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | VFG0596 | Protein | 1e-26 | 42 |
| RUM_03870 | YP_007828630.1 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | VFG1389 | Protein | 2e-30 | 41 |
