Gene Information

Name : HCH_03613 (HCH_03613)
Accession : YP_434778.1
Strain : Hahella chejuensis KCTC 2396
Genome accession: NC_007645
Putative virulence/resistance : Virulence
Product : response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3750527 - 3751213 bp
Length : 687 bp
Strand : -
Note : COG0745

DNA sequence :
ATGAAACTGCTGGTCGTGGAAGACGAAGCGAAAACCAGGGAATACCTGCGGAAAGGCCTGACGGAAGCGGGCTTTGTCGT
GGATACCGCCGCCAATGGCCTGGATGGCCGACATCTGGCCATGACCGAGCATTTCGACCTGATTGTCATGGACATCATGC
TGCCGGACCTGGACGGCTGGCGTCTGCTGGGGTCATTGCGGGAAGCGGGCAACGCTACCCCGGTGCTGTTTCTGACCGCC
CGCGACAGCGTGTCGGACCGGGTGCAGGGACTGGAGTCAGGCGCCGATGATTATCTGGTGAAGCCGTTCGCCTTCTCCGA
ACTGCTGGCGCGCGTGCGCAATATCCTGCGGCGGGGTCTGGTTCCGTTGAGTGGGAACCAGCTGAGCGTAGGCGATCTGA
CATTGGATATCTCCCGCCGCAGCGCGCGTCGGGGAGGGTCGGAGATACAGCTCACCACGAAAGAGTTCACCTTGCTGGAG
TTGTTCGTGCGGCGGCAGGGGGAAGTGTTGCCGCGGTCTCTGATCGCCTCTCAGGTGTGGGATATGAATTTTGACAGCGA
CACCAATGTCATTGATGTGGCGGTGCGTCGCCTGCGTATGAAAGTGGACGACGGCCATGACATTAAATTGATTCAGACCG
TAAGGGGCATGGGTTATCGGCTGGATGTGCGCAATGAGTTCCACTAA

Protein sequence :
MKLLVVEDEAKTREYLRKGLTEAGFVVDTAANGLDGRHLAMTEHFDLIVMDIMLPDLDGWRLLGSLREAGNATPVLFLTA
RDSVSDRVQGLESGADDYLVKPFAFSELLARVRNILRRGLVPLSGNQLSVGDLTLDISRRSARRGGSEIQLTTKEFTLLE
LFVRRQGEVLPRSLIASQVWDMNFDSDTNVIDVAVRRLRMKVDDGHDIKLIQTVRGMGYRLDVRNEFH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-54 59
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-53 57

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HCH_03613 YP_434778.1 response regulator BAC0111 Protein 4e-62 66
HCH_03613 YP_434778.1 response regulator BAC0083 Protein 1e-59 63
HCH_03613 YP_434778.1 response regulator BAC0197 Protein 7e-59 62
HCH_03613 YP_434778.1 response regulator BAC0347 Protein 4e-57 61
HCH_03613 YP_434778.1 response regulator BAC0638 Protein 3e-57 61
HCH_03613 YP_434778.1 response regulator BAC0125 Protein 1e-54 60
HCH_03613 YP_434778.1 response regulator BAC0308 Protein 4e-55 58
HCH_03613 YP_434778.1 response regulator NC_002516.2.879194.p Protein 2e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HCH_03613 YP_434778.1 response regulator VFG0596 Protein 4e-55 59
HCH_03613 YP_434778.1 response regulator VFG1389 Protein 5e-31 45
HCH_03613 YP_434778.1 response regulator VFG1390 Protein 4e-35 44
HCH_03613 YP_434778.1 response regulator VFG1386 Protein 5e-29 41