Gene Information

Name : espD (ECO103_3605)
Accession : YP_003223462.1
Strain : Escherichia coli 12009
Genome accession: NC_013353
Putative virulence/resistance : Virulence
Product : translocon EspD
Function : -
COG functional category : S : Function unknown
COG ID : COG5613
EC number : -
Position : 3681892 - 3683034 bp
Length : 1143 bp
Strand : -
Note : Integrative element ECO103_IE03

DNA sequence :
ATGCTCAATGTAAATAGCGATATCCAGTCGATGAGGTCTGGGGCCAGCGCTGCTACGGCTACTTCAGGTATTAATCAGCC
TGAAGTGACTTCCGCGCTGGATTTACAACTGGTTAAATCCACGGCCCCATCAGCAAGTTGGACAGAAAGTACCGCTTTAC
CAACGCCACCGGCAGGCCACTCATTAGTGACGCCCTCTGCTGCTGAGGATGTCCTGAGTAAACTGTTTGGTGGTATTAGT
GGTGAAGTTAGGAGTCGAACAGAGGGAACCGAACCACAGCGCAGCACTCAGAATGCAAGCTCTGGCTATCCTTATCTTTC
TCAGGTGAATAACGTTGACCCTCAGGCCATGATGATGATGGTCACCCTGTTATCCCTGGATGCTTCAGCGCAGAAAGTTG
CGAGTATGAAAAACTCCAACGAGATCTACACGGATGGGCAAAATAAGGCGCTGGATAATAAAACGCTGGAGTTTAAAAAG
CAGCTCGAAGAACAACAGAAAGCCGAAGAGAAAGCACAAAAAAGTAAAATTGTTGGTCAGGTCTTTGGTTGGTTGGGCGT
CGCGGTAACTGCTATTGCAGCTTTTTTTAACCCGGCACTCTGGGCTGTTGTTGCCGTTAGCGCAACAGCAATGGCACTGC
AAACTGCAGTTGATGTAATGGGCGATAAGGCCCCGCAGGCGTTAAAGACAGCAGCGCAAGTCTTTGGCGGAGTATCTATT
GCTGCAAGTATTCTGACAGCCGGCATTGGCGGGGTGTCTTCACTTATGTCTAAAGTTGGCGATGTCGCTAACAAAGTTGG
TTCAAACATCGTGAAAACAGTTACTAAACTGGCCGATGTATTTGTTGAGAACGTTGTTTCAAAAGTTGCGGCAACGGCAA
ATGGATTTACGACCTCTGCACGTTCTATTGGGACAACTGTGCTGAATAATGATTCTGCGCAATACAGCATATTGGCTCAG
TTATCTGCTTACGCGGTGCAAAACTTAACTCGACAGAGTGAAAACCTGGGTGAGAGTGCGAAGGTTGAGCTGGATAAAGC
TGCAGCCGAGTTGCGAAACCAGGCAAGCTATTTACAAAATGCTTCTCAGTTAATATCCGACTCAGCACGAGTAAATAGCC
GTATTGTTAGTGGTCGAGTTTAA

Protein sequence :
MLNVNSDIQSMRSGASAATATSGINQPEVTSALDLQLVKSTAPSASWTESTALPTPPAGHSLVTPSAAEDVLSKLFGGIS
GEVRSRTEGTEPQRSTQNASSGYPYLSQVNNVDPQAMMMMVTLLSLDASAQKVASMKNSNEIYTDGQNKALDNKTLEFKK
QLEEQQKAEEKAQKSKIVGQVFGWLGVAVTAIAAFFNPALWAVVAVSATAMALQTAVDVMGDKAPQALKTAAQVFGGVSI
AASILTAGIGGVSSLMSKVGDVANKVGSNIVKTVTKLADVFVENVVSKVAATANGFTTSARSIGTTVLNNDSAQYSILAQ
LSAYAVQNLTRQSENLGESAKVELDKAAAELRNQASYLQNASQLISDSARVNSRIVSGRV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
espD YP_003223462.1 translocon EspD Virulence LEE Protein 1e-153 100
espD AAL57555.1 EspD Virulence LEE Protein 3e-152 99
espD CAC81875.1 EspD protein Virulence LEE II Protein 3e-152 99
espD CAI43861.1 EspD protein Virulence LEE Protein 3e-153 99
espD AAK26728.1 EspD Virulence LEE Protein 3e-152 99
espD YP_003232166.1 translocator EspD Virulence LEE Protein 4e-152 99
espD AAC38395.1 EspD Virulence LEE Protein 1e-134 88
unnamed AAL06382.1 EspD Virulence LEE Protein 3e-135 86
espD YP_003236075.1 translocon EspD Virulence LEE Protein 8e-132 84
espD AAC31500.1 L0021 Virulence LEE Protein 3e-119 75
espD ACU09445.1 secreted protein EspD Virulence LEE Protein 3e-119 75
espD NP_290255.1 hypothetical protein Virulence LEE Protein 4e-119 75
ECs4555 NP_312582.1 protein EspD Virulence LEE Protein 4e-119 75
espD AFO66304.1 putative secreted protein EspD Not tested SESS LEE Protein 2e-91 66
espD AFO66388.1 putative secreted protein EspD Virulence SESS LEE Protein 2e-91 66

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
espD YP_003223462.1 translocon EspD VFG0743 Protein 8e-135 88
espD YP_003223462.1 translocon EspD VFG0799 Protein 2e-119 75