Gene Information

Name : ECO103_3616 (ECO103_3616)
Accession : YP_003223473.1
Strain : Escherichia coli 12009
Genome accession: NC_013353
Putative virulence/resistance : Virulence
Product : T3SS component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3694814 - 3695230 bp
Length : 417 bp
Strand : -
Note : Integrative element ECO103_IE03

DNA sequence :
TTGACTAGCATTTCTCTAAAAAGAAATTTGATAGAGCCTGTTTCTTTTCAGCCGTCAGATGATTGGCCGCAGGGAGAAGA
AAGTTTTAATGATATTTTTAATCGCATAAAAAAAAGAACACCTGACACTTCGTTCATACGAATGGCTTCTTTATGGAAAC
GATTGTTCTACGCTCCTGGACAGAGGCGACGCTACTTTGAACAAGGAGAGCGTTCATTTAGTATTATTTGTGGAAAGTTA
CGCGGAATTGTTTTAACAATAAAATGTAGTAATGGAACCATTTATCTGTCTATTACACTGAACCCCAATAACAAAAATCA
TATTTTTTTATACCATAAAAAGAATTATATTTGTGATAAGTTAAAAGAAATCTTTCCTGATGAACCTATTGAATTCTCAA
TTGAATATGAAAATTAA

Protein sequence :
MTSISLKRNLIEPVSFQPSDDWPQGEESFNDIFNRIKKRTPDTSFIRMASLWKRLFYAPGQRRRYFEQGERSFSIICGKL
RGIVLTIKCSNGTIYLSITLNPNNKNHIFLYHKKNYICDKLKEIFPDEPIEFSIEYEN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ECO103_3616 YP_003223473.1 T3SS component Virulence LEE Protein 3e-61 100
ECO26_5273 YP_003232155.1 T3SS component protein Virulence LEE Protein 3e-61 100
unnamed AAK26717.1 unknown Not tested LEE Protein 3e-61 99
ECO111_3750 YP_003236086.1 putative T3SS component protein Virulence LEE Protein 2e-54 84
unnamed ACU09456.1 conserved hypothetical protein Not tested LEE Protein 9e-54 82
ECs4566 NP_312593.1 hypothetical protein Not tested LEE Protein 1e-53 82
unnamed AAC38385.1 Orf16 Not tested LEE Protein 3e-53 81
unnamed AAL06371.1 unknown Not tested LEE Protein 6e-36 78
SESS1296_03650 AFO66328.1 putative LEE-encoded putative type III secretion system factor Virulence SESS LEE Protein 1e-18 41
SESS1635_04950 AFO66417.1 putative LEE-encoded putative type III secretion system factor Virulence SESS LEE Protein 1e-18 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECO103_3616 YP_003223473.1 T3SS component VFG0732 Protein 1e-53 81