Gene Information

Name : ECO103_3649 (ECO103_3649)
Accession : YP_003223504.1
Strain : Escherichia coli 12009
Genome accession: NC_013353
Putative virulence/resistance : Unknown
Product : IS629 transposase OrfB
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 3721557 - 3722444 bp
Length : 888 bp
Strand : +
Note : -

DNA sequence :
ATGCCACTGCTGGATAAGCTGCGTGAGCAGTACGGGGTCGGACCGGTATGCAGCGAACTGCATATTGCCCCGTCAACGTA
TTACCACTGTCAGCAACAGCGACATTATCCGGATAAACGCAGTGCCCGTGCGCAGCGCGATGACTGGCTGAAGAAAGAGA
TACAGCGCGTATACGATGAAAATCACAAGGTATACGGTGTGCGTAAAGTCTGGCGTCAGTTGTTACGGGAAGGTATCAGA
GTGGCCAGATGCACTGTGGCACGTCTCATGGCGGTTATGGGACTTGCCGGTGTTCTCCGGGGTAAAAAGGTCCGCACTAC
CGTCAGCCGGAAAGCCGTTGCCGCATGCGACCGCGTAAACCGTCAGTTCGTGGCAGAACGTCCAGACCAGTTGTGGGTGG
CTGATTTTACCTGGGTAAGCACATGGCAGGGCTTCGTTTATGTGGCGTTCATCATTGATGTGTTCGCCGGATACATCGTG
GGATGGCAGGTCTCATCATCCATGGAAACAACATTCGTGCTGGATGCACTGGAGCAGGCGTTGTGGGCCCGTCGGCCGTC
CGGCACAATCCATCACAGTGATAAAGGTTCTCAGTATGTATCGCTGGCCTACACGCAGCGGCTTAAGGAAGCCGGATTAC
TGGCATCAACAGGGAGTACTGGCGACTCGTATGACAACGCGATGGCTGAGAGCATCAATGGTCTTTACAAAGCGGAGGTA
ATACACCGTAAGAGCTGGAAAAACCGGACAGAAGTGGAACAGGCCACACTAACGTGGGTGGACTGGTATAACAATCGACG
ATTGCTGGAAAGGCTGGGCCATATTCCTCCGGCAGAAGCAGAAAAAGCTTATTATGCTTCCATCGGAAATAATGATCTGG
CAGCCTGA

Protein sequence :
MPLLDKLREQYGVGPVCSELHIAPSTYYHCQQQRHYPDKRSARAQRDDWLKKEIQRVYDENHKVYGVRKVWRQLLREGIR
VARCTVARLMAVMGLAGVLRGKKVRTTVSRKAVAACDRVNRQFVAERPDQLWVADFTWVSTWQGFVYVAFIIDVFAGYIV
GWQVSSSMETTFVLDALEQALWARRPSGTIHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEV
IHRKSWKNRTEVEQATLTWVDWYNNRRLLERLGHIPPAEAEKAYYASIGNNDLAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 1e-134 99
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 1e-134 99
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 1e-134 99
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 6e-135 99
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 2e-132 97
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 9e-130 96
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 3e-130 96
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 2e-129 96
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 2e-129 96
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 8e-130 96
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 4e-104 96
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 6e-97 96
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 8e-129 95
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 1e-128 95
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 2e-89 95
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 1e-89 95
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 1e-126 94
Z1221 NP_286756.1 transposase Not tested TAI Protein 5e-127 94
Z1198 NP_286733.1 transposase Not tested TAI Protein 2e-126 94
Z1638 NP_287141.1 transposase Not tested TAI Protein 2e-126 94
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 2e-124 93
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 9e-50 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECO103_3649 YP_003223504.1 IS629 transposase OrfB VFG1602 Protein 9e-125 93