Gene Information

Name : BSn5_18655 (BSn5_18655)
Accession : YP_004207364.1
Strain : Bacillus subtilis BSn5
Genome accession: NC_014976
Putative virulence/resistance : Virulence
Product : two-component response regulator YkoH
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3605849 - 3606535 bp
Length : 687 bp
Strand : +
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence :
TTGGACAAAGGACACATATTAATTGTGGAAGATGAAGAAAAAATCGCCAGGGTTCTGCAGCTTGAATTGGAATATGAAGG
ATACGGCGTGACCATTAAACACAATGGAACAGAAGGTCTTGAGGCGGCCGCGGAAGGCGGGCATTCCTTGGTGCTTCTTG
ATGTCATGCTGCCGGGGCTTAGCGGACTGGAAGTGCTGCGCCGCTTGAGAAAAACGGATCAACAGACACCGGTCATTTTA
TTAACGGCGCGAGACAGCATTCCTGATAAGGTAACAGGTCTGGATATCGGTGCGAATGACTATGTCACCAAGCCGTTTGA
AATCGAGGAATTACTTGCGAGAATCAGGGCGGCGCTGCGGCAAAATGGAACAAAAACGGAAGATATCGGCACCTTTCTTA
CATATGACGATTTGCGGGTGAACGAAAAAACCCGTGAAGTGAGACGCGGAGACAAAGAGGTGGAATTAACGCCGCGGGAA
TTTGATCTGCTCGTCTATATGCTAAAGCATCCGCAGCAAGTGCTGACACGGGAGCAAATTCTAAGCTCGGTATGGGGATT
TGATTATATCGGTGATACAAATGTCGTGGACGTCTACATAAGATACATCAGAAAAAAACTGGACTATCCTTACGAAAAAC
AGCTGATCCATACGATTCGCGGGGTCGGCTATGCCATTAAGGGGTAA

Protein sequence :
MDKGHILIVEDEEKIARVLQLELEYEGYGVTIKHNGTEGLEAAAEGGHSLVLLDVMLPGLSGLEVLRRLRKTDQQTPVIL
LTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNGTKTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPRE
FDLLVYMLKHPQQVLTREQILSSVWGFDYIGDTNVVDVYIRYIRKKLDYPYEKQLIHTIRGVGYAIKG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 8e-39 45
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 6e-38 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BSn5_18655 YP_004207364.1 two-component response regulator YkoH NC_003923.1003417.p0 Protein 5e-43 47
BSn5_18655 YP_004207364.1 two-component response regulator YkoH NC_013450.8614146.p0 Protein 5e-43 47
BSn5_18655 YP_004207364.1 two-component response regulator YkoH NC_002951.3238224.p0 Protein 5e-43 47
BSn5_18655 YP_004207364.1 two-component response regulator YkoH NC_007793.3914065.p0 Protein 5e-43 47
BSn5_18655 YP_004207364.1 two-component response regulator YkoH NC_002758.1121390.p0 Protein 5e-43 47
BSn5_18655 YP_004207364.1 two-component response regulator YkoH NC_010079.5776364.p0 Protein 5e-43 47
BSn5_18655 YP_004207364.1 two-component response regulator YkoH NC_002952.2859858.p0 Protein 5e-43 47
BSn5_18655 YP_004207364.1 two-component response regulator YkoH NC_007622.3794948.p0 Protein 5e-43 47
BSn5_18655 YP_004207364.1 two-component response regulator YkoH HE999704.1.gene1528. Protein 9e-42 47
BSn5_18655 YP_004207364.1 two-component response regulator YkoH BAC0125 Protein 7e-40 45
BSn5_18655 YP_004207364.1 two-component response regulator YkoH AE015929.1.gene1106. Protein 2e-37 44
BSn5_18655 YP_004207364.1 two-component response regulator YkoH BAC0308 Protein 3e-39 44
BSn5_18655 YP_004207364.1 two-component response regulator YkoH BAC0083 Protein 3e-41 43
BSn5_18655 YP_004207364.1 two-component response regulator YkoH BAC0197 Protein 7e-38 43
BSn5_18655 YP_004207364.1 two-component response regulator YkoH NC_012469.1.7686381. Protein 2e-39 42
BSn5_18655 YP_004207364.1 two-component response regulator YkoH BAC0638 Protein 1e-33 42
BSn5_18655 YP_004207364.1 two-component response regulator YkoH AE016830.1.gene1681. Protein 2e-37 42
BSn5_18655 YP_004207364.1 two-component response regulator YkoH NC_012469.1.7685629. Protein 1e-33 42
BSn5_18655 YP_004207364.1 two-component response regulator YkoH FJ349556.1.orf0.gene Protein 1e-32 41
BSn5_18655 YP_004207364.1 two-component response regulator YkoH BAC0111 Protein 1e-37 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BSn5_18655 YP_004207364.1 two-component response regulator YkoH VFG0596 Protein 3e-39 45
BSn5_18655 YP_004207364.1 two-component response regulator YkoH VFG1390 Protein 5e-48 44
BSn5_18655 YP_004207364.1 two-component response regulator YkoH VFG1386 Protein 6e-47 44
BSn5_18655 YP_004207364.1 two-component response regulator YkoH VFG1389 Protein 5e-40 42