Gene Information

Name : espD (ECO111_3739)
Accession : YP_003236075.1
Strain : Escherichia coli 11128
Genome accession: NC_013364
Putative virulence/resistance : Virulence
Product : translocon EspD
Function : -
COG functional category : S : Function unknown
COG ID : COG5613
EC number : -
Position : 3723532 - 3724674 bp
Length : 1143 bp
Strand : -
Note : Integrative element ECO111_IE05

DNA sequence :
ATGCTTAATGTAAATAGCGATATCCAGTCTGTGATGTCTGGGGTCAGTGCCGCTACGACTACTTCAGGTATTAATCAACC
TGGAGGGTCTTCCGCGCTGGATTTACAGCTGGTTAAATCCGCTGCCCCATCAGCAAGTTGGACAGAAAGTACCGCTTTAC
CAACGCCGCCGGCAGGCCACTCATTAGTGACGCCCTCTGTTGCTGAAGATGTTTTGAGCAAACTTTTTGGCGGCATTAGT
GGTGATGTTATGAGCCGCACTAGTGGGACAGAACCACAGAGTAGTACACAAAGTACAACCTCTGGCTATCCTTATCTTTC
TCAGGTGAATAAGGTTGACCCTCAGACAATGATGATGATGGCCACTCTGTTATCCCTGGATGCCTCAGCGCAGAAAGTTG
CGAGTATGAAGAACTCCAACGAGATCTACAAGGATGGACAAAATCAAGCGCTGGAAAATAAAACTCTGGAATTTAAAAAA
CAGCTTGAAGAACAACAGAAAGCCGAAGAGAAAGCACAAAAAAGTAAAATTGTTGGTCAGGTCTTTGGTTGGTTAGGGGT
TGCGGTAACTGCTGTTGCAGCTATTTTTAACCCAGCTCTCTGGGCTGTTGTTGCTGTTAGTGCAACAGCAATGGCGCTGC
AAACTGCGGTTGATGTTATGGGCGATAAGGCTCCGCAGGCGTTAAAAACAGCAGCGCAAGCTTTTGGCGGTCTATCTCTT
GCCGCAGGTATTCTGACAGCCGGCATTGGCGGGGTGTCTTCACTTATGTCTAAAGTTGGCGATGTGGCTGGCAAAGTGGG
TTCAAACATCGTAAAAGCGGTCACTACGTTGGCCGACACTCTTGTCGAAAACGTTGCATCGAAAATTTCGGCTGTGGCAA
ATGGTTTAACCACTTCTTCGCGCTCTATTGGTACAACTGTGCTGAATAATGACGCAGCGAATCATAATCTGTTATCACAG
ATTTCTTCTTTTGTTGTGGAAAATTTAACTCGACAAAGTGAAAGCTTAAGTCAGAGTGCGAAGGCAGAGCTGGATAAAGC
CGCACTCGAGGTGCAAAACCAGGCGAATTATATACAGAGTGCTTCTAAGCTAATTTCTGATTCTGCGCGAGTGAATAGCC
GTATTGTCAGCGGTCGAGTTTAA

Protein sequence :
MLNVNSDIQSVMSGVSAATTTSGINQPGGSSALDLQLVKSAAPSASWTESTALPTPPAGHSLVTPSVAEDVLSKLFGGIS
GDVMSRTSGTEPQSSTQSTTSGYPYLSQVNKVDPQTMMMMATLLSLDASAQKVASMKNSNEIYKDGQNQALENKTLEFKK
QLEEQQKAEEKAQKSKIVGQVFGWLGVAVTAVAAIFNPALWAVVAVSATAMALQTAVDVMGDKAPQALKTAAQAFGGLSL
AAGILTAGIGGVSSLMSKVGDVAGKVGSNIVKAVTTLADTLVENVASKISAVANGLTTSSRSIGTTVLNNDAANHNLLSQ
ISSFVVENLTRQSESLSQSAKAELDKAALEVQNQANYIQSASKLISDSARVNSRIVSGRV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
espD YP_003236075.1 translocon EspD Virulence LEE Protein 1e-136 100
espD AAC38395.1 EspD Virulence LEE Protein 9e-120 88
unnamed AAL06382.1 EspD Virulence LEE Protein 3e-119 87
espD CAI43861.1 EspD protein Virulence LEE Protein 1e-118 85
espD AAK26728.1 EspD Virulence LEE Protein 1e-118 85
espD AAL57555.1 EspD Virulence LEE Protein 1e-118 85
espD YP_003232166.1 translocator EspD Virulence LEE Protein 2e-118 85
espD CAC81875.1 EspD protein Virulence LEE II Protein 1e-118 85
espD YP_003223462.1 translocon EspD Virulence LEE Protein 5e-118 84
ECs4555 NP_312582.1 protein EspD Virulence LEE Protein 3e-103 72
espD AAC31500.1 L0021 Virulence LEE Protein 2e-103 72
espD ACU09445.1 secreted protein EspD Virulence LEE Protein 2e-103 72
espD NP_290255.1 hypothetical protein Virulence LEE Protein 3e-103 72
espD AFO66304.1 putative secreted protein EspD Not tested SESS LEE Protein 8e-79 61
espD AFO66388.1 putative secreted protein EspD Virulence SESS LEE Protein 8e-79 61

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
espD YP_003236075.1 translocon EspD VFG0743 Protein 5e-120 88
espD YP_003236075.1 translocon EspD VFG0799 Protein 1e-103 72