Gene Information

Name : sepD (ECO111_3758)
Accession : YP_003236094.1
Strain : Escherichia coli 11128
Genome accession: NC_013364
Putative virulence/resistance : Virulence
Product : secretion switching protein SepD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3742327 - 3742782 bp
Length : 456 bp
Strand : +
Note : Integrative element ECO111_IE05

DNA sequence :
ATGAACAATAATAATGGCATAGCAAAGAATGATTGTGACTGGCTAACGGCCCTTGATTTTGTAAAGGATGTCAACGGTTC
ACCAACGCATCTCACTTTTTATATCTACCAAAAAAATGCTTTCTTGCACGATTTTGGAAACTACTGGGTTCTATATATCG
AGCTTAGTGGTGATTTTCGTCAGGTTCCAACAGATACATTTATCAGACTCTGCAATATCCTGGCCGTTAGTAAAGAATAT
AAACAAATGGGTATTTTCCTGTCTAATAAGAAGTGGTATCTTTGCCAAATTTTTCATAAAGATAATAATCATCGCGCAAA
CATGTCAAAAGCAATAATGCAACATACTCTCGCCTCGTTGCTCGACAAGCAATTTGATAAACTAGAGCAATCATCTTCAT
CAGATACAATGATGCCGCCAACACACTTGTTTTCTGATATAGGACGAATTGTGTAA

Protein sequence :
MNNNNGIAKNDCDWLTALDFVKDVNGSPTHLTFYIYQKNAFLHDFGNYWVLYIELSGDFRQVPTDTFIRLCNILAVSKEY
KQMGIFLSNKKWYLCQIFHKDNNHRANMSKAIMQHTLASLLDKQFDKLEQSSSSDTMMPPTHLFSDIGRIV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sepD YP_003236094.1 secretion switching protein SepD Virulence LEE Protein 2e-67 100
Z5125 NP_290274.1 hypothetical protein Not tested LEE Protein 2e-66 99
ECs4574 NP_312601.1 SepD Virulence LEE Protein 2e-66 99
unnamed AAC31519.1 L0040 Not tested LEE Protein 1e-66 99
sepD ACU09464.1 SepD protein Virulence LEE Protein 1e-66 99
unnamed AAC38378.1 rOrf6 Not tested LEE Protein 1e-67 99
st18 CAC81856.1 ST18 protein Not tested LEE II Protein 5e-63 92
sepD CAI43880.1 SepD protein Virulence LEE Protein 5e-63 92
unnamed AAK26709.1 unknown Not tested LEE Protein 5e-63 92
sepD YP_003223481.1 secretion switching protein SepD Not tested LEE Protein 7e-63 92
sepD AAL57536.1 SepD Virulence LEE Protein 5e-63 92
sepD YP_003232147.1 secretion switching protein SepD Not tested LEE Protein 7e-63 92
unnamed AAL06363.1 SepD Virulence LEE Protein 2e-62 89
sepD AFO66325.1 putative LEE-encoded type III secretion system component Virulence SESS LEE Protein 1e-44 60
sepD AFO66409.1 putative LEE-encoded type III secretion system component Virulence SESS LEE Protein 1e-44 60

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sepD YP_003236094.1 secretion switching protein SepD VFG0724 Protein 6e-68 99
sepD YP_003236094.1 secretion switching protein SepD VFG0818 Protein 5e-67 99