Gene Information

Name : BPP0376 (BPP0376)
Accession : NP_882730.1
Strain : Bordetella parapertussis 12822
Genome accession: NC_002928
Putative virulence/resistance : Virulence
Product : transcriptional regulatory protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 396185 - 396898 bp
Length : 714 bp
Strand : -
Note : Two-component regulatory system family, response regulator protein. Similar to Escherichia coli transcriptional regulatory protein PcoR SWALL:PCOR_ECOLI (SWALL:Q47456) (226 aa) fasta scores: E(): 1.1e-32, 44.84% id in 223 aa, and to Brucella melitensis tw

DNA sequence :
ATGTGGCAGTGTCTGCTTATTGAGGATGATCAAGCCAACGCGCGCTATCTCGCCAATGGCCTGACGGAACTGGGGCACAT
GGTTACCGTCAGCGGGGATGGGGCGAGCGGCCTGGAGAATGCCATGAAGGACCAATGGGACATCATCATCCTGGACCGCA
TGCTGCCCAATAACGTGGATGGCCTTTCAATACTTTCCACGCTGCGGGCGCTGGGCAAGAAAACGCCGGTCCTGGTGCTC
AGCGCGCTGTCGGCTGTCGACGACCGGGTTGACGGTTTACGGGCCGGCGGTGACGACTATCTGGTCAAGCCGTTCTCCTT
CTCCGAGCTGGTTGCCAGGCTGGATGCCCTGGTCAGGCGGACGCGCCCCGATCCGGACGTGAAGGAACTTCGGATTGCGG
ATCTTTCGGTCAATGTCGCCACGCAGAAAGTGCAACGCGCCGGAAGACCAATATCCCTGCAGCCGCAGGAGTTCCGGTTA
TTGGTCTATCTCATGCTGCACGCTCACCGGATCGTGACGCGAACGATGTTGCTCGAGACGATCTGGGGCTACAGTTTCGA
CCCGCAGTCGAATGTGATCGATGTCCAGGTCAGCCGGCTGCGCCGCAAGATAGACGCCTCCTGCGCGACACCGCTGATCC
ACACGATACGCGGCGCCGGCTATACCCTTTCCGACAAGCAGGGATCCGACAACATGGAACTTGGAAAAGAATGA

Protein sequence :
MWQCLLIEDDQANARYLANGLTELGHMVTVSGDGASGLENAMKDQWDIIILDRMLPNNVDGLSILSTLRALGKKTPVLVL
SALSAVDDRVDGLRAGGDDYLVKPFSFSELVARLDALVRRTRPDPDVKELRIADLSVNVATQKVQRAGRPISLQPQEFRL
LVYLMLHAHRIVTRTMLLETIWGYSFDPQSNVIDVQVSRLRRKIDASCATPLIHTIRGAGYTLSDKQGSDNMELGKE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-37 44
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 7e-37 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BPP0376 NP_882730.1 transcriptional regulatory protein BAC0308 Protein 9e-42 45
BPP0376 NP_882730.1 transcriptional regulatory protein BAC0347 Protein 2e-43 44
BPP0376 NP_882730.1 transcriptional regulatory protein BAC0125 Protein 3e-40 43
BPP0376 NP_882730.1 transcriptional regulatory protein BAC0197 Protein 4e-39 42
BPP0376 NP_882730.1 transcriptional regulatory protein BAC0111 Protein 5e-45 42
BPP0376 NP_882730.1 transcriptional regulatory protein BAC0638 Protein 9e-38 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BPP0376 NP_882730.1 transcriptional regulatory protein VFG0596 Protein 6e-38 44
BPP0376 NP_882730.1 transcriptional regulatory protein VFG1389 Protein 4e-36 43
BPP0376 NP_882730.1 transcriptional regulatory protein VFG1390 Protein 1e-39 41