Gene Information

Name : YpsIP31758_3822 (YpsIP31758_3822)
Accession : YP_001402777.1
Strain : Yersinia pseudotuberculosis IP 31758
Genome accession: NC_009708
Putative virulence/resistance : Virulence
Product : YscJ/HrcJ family type III secretion apparatus lipoprotein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4669
EC number : -
Position : 4306109 - 4306840 bp
Length : 732 bp
Strand : -
Note : identified by match to protein family HMM PF01514; match to protein family HMM TIGR02544

DNA sequence :
ATGAAATCTCTGCGGCAGATGTTAGCGATAGTCCTAATGACATTATCCCTTTCCGGTTGTGATATGGAGCTGTATAGCGG
GCTGTCTGAGGGGGAGGCCAATCAAATGCTGGCATTGCTGATGCTGCACCAAATTAACGCCGAAAAACAGATCGAAAAGA
GCGGGATGGTGGGGCTAACGGTCGATAAGCGGCAATTTATTAATGCCGTTGAGTTGCTACGACAGAATGGTTTCCCCCGA
CAGCGTTTTATCACGGTGGATGAGCTGTTTCCTGCTAACCAGTTAGTGACCTCTCCCACGCAAGAGCAGGCCAAGATGGT
TTTTCTGAAAGAACAGCAGTTGGAAAACATGTTGAGCCATATGGATGGGGTGATTCATGCCGATGTCACGGTGGCAATGC
CTATGTCGGTTGACGGGAAAAACCCGCTTCCGCATACCGCCTCGGTGTTTATCAAGTATTCGCCGGAAGTCAATTTACAA
AGCTATCAGTCGCAAATCAAAGGGTTGGTCCGCGATGCGGTTCCCGGTATTGATTACGCCAAGATAAGCGTGGTGATGCA
GCCTGCGAACTACCGTTTCAGTGCCTCAGAGGCAGAGCAACAACAGGGGCCACAAACCACGGTGCAATGGTTATTACGCC
ATGTAGGAATGGTGCAGAACATGGTGGGAGTGGCGTTTATCTCACTTATTGTATTGATGTTTGTAGGCTGGTTTTACTCT
CGGCGTCGGTAA

Protein sequence :
MKSLRQMLAIVLMTLSLSGCDMELYSGLSEGEANQMLALLMLHQINAEKQIEKSGMVGLTVDKRQFINAVELLRQNGFPR
QRFITVDELFPANQLVTSPTQEQAKMVFLKEQQLENMLSHMDGVIHADVTVAMPMSVDGKNPLPHTASVFIKYSPEVNLQ
SYQSQIKGLVRDAVPGIDYAKISVVMQPANYRFSASEAEQQQGPQTTVQWLLRHVGMVQNMVGVAFISLIVLMFVGWFYS
RRR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0263 YP_002345344.1 type III secretion system apparatus lipoprotein Virulence Not named Protein 3e-113 99
ssaJ CAA12196.1 SsaJ Virulence SPI-2 Protein 5e-50 53
ssaJ NP_456119.1 putative pathogenicity island lipoprotein Virulence SPI-2 Protein 2e-50 48
ssaJ NP_805080.1 pathogenicity island lipoprotein Virulence SPI-2 Protein 2e-50 48
ssaJ CAA70532.1 secretion system apparatus Virulence SPI-2 Protein 1e-50 48
ssaJ NP_460374.1 needle complex inner membrane lipoprotein Virulence SPI-2 Protein 2e-50 48
ssaJ YP_216417.1 secretion system apparatus protein SsaJ Virulence SPI-2 Protein 6e-50 48
escJ YP_003236093.1 T3SS structure protein EscJ Virulence LEE Protein 1e-36 41
escJ AAC38379.1 EscJ Virulence LEE Protein 1e-36 41
escJ NP_290273.1 hypothetical protein Virulence LEE Protein 1e-36 41
escJ AAC31518.1 L0039 Virulence LEE Protein 1e-36 41
ECs4573 NP_312600.1 EscJ Virulence LEE Protein 1e-36 41
escJ ACU09463.1 EscJ protein Virulence LEE Protein 1e-36 41
unnamed AAL06364.1 EscJ Virulence LEE Protein 2e-36 41
lscJ AAO18027.1 LscJ Virulence TTSS locus Protein 1e-37 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YpsIP31758_3822 YP_001402777.1 YscJ/HrcJ family type III secretion apparatus lipoprotein VFG0510 Protein 8e-51 48
YpsIP31758_3822 YP_001402777.1 YscJ/HrcJ family type III secretion apparatus lipoprotein VFG0218 Protein 1e-37 42
YpsIP31758_3822 YP_001402777.1 YscJ/HrcJ family type III secretion apparatus lipoprotein VFG0817 Protein 6e-37 41
YpsIP31758_3822 YP_001402777.1 YscJ/HrcJ family type III secretion apparatus lipoprotein VFG0725 Protein 6e-37 41