Gene Information

Name : BN112_3880 (BN112_3880)
Accession : YP_006969916.1
Strain : Bordetella bronchiseptica 253
Genome accession: NC_019382
Putative virulence/resistance : Virulence
Product : response regulatory protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4166842 - 4167513 bp
Length : 672 bp
Strand : -
Note : -

DNA sequence :
ATGGCTATCCTCGTCATCGAAGACGACCTCAAGACTGGCGACTACCTGAAGAAAGGCTTGCTGGAATCCGGCTATTCCGT
GGATCTCGCCCGCAATGGCATCGACGGCCTGCACCGCCTGCGCGAGCAGCGCTACGACGTGCTGGTGCTCGATGTCATGC
TGCCGGGCAAGGACGGCTGGCAGGTCATCGAAGAGGTACGCCAGGACTCCGACGTGCCGGTCATCTTCCTGACGGCGCGC
GACCATGTCGCCGACCGCATCCGGGGCCTGCGGCTGGGCGCCGACGACTACCTGGTCAAGCCGTTCTCCTTCGCCGAGCT
GGTGCTGCGCATCCAGACGATGCTGCGGCGCGGCGCGGCGCGCGCGGCCGAAACGCTGCAGGTCGCCGACCTGCGGCTCG
ACCCGGTGCGGCGCAAGGTCACCCGCGGCGGCGCCAGCATCGTCCTCACCAACAAGGAGTTCATGCTCCTGCACCTGCTC
ATCAGAAGGCAGGGCGAAGCCCTGTCGCGCACCATCATCGCCTCCGAAGTCTGGGACATGAACTTCGACAGCGACACCAA
CGTGGTGGACGTGGCCATCAAGCGCCTGCGCGCCAAGGTCGACGCCCCGTTCCCCCTCAAGCTGATCCAGACCGTGCGCG
GCATCGGCTACGCCCTGGCGGAGCAGCCTTGA

Protein sequence :
MAILVIEDDLKTGDYLKKGLLESGYSVDLARNGIDGLHRLREQRYDVLVLDVMLPGKDGWQVIEEVRQDSDVPVIFLTAR
DHVADRIRGLRLGADDYLVKPFSFAELVLRIQTMLRRGAARAAETLQVADLRLDPVRRKVTRGGASIVLTNKEFMLLHLL
IRRQGEALSRTIIASEVWDMNFDSDTNVVDVAIKRLRAKVDAPFPLKLIQTVRGIGYALAEQP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-55 55
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 4e-54 54

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BN112_3880 YP_006969916.1 response regulatory protein BAC0125 Protein 2e-65 62
BN112_3880 YP_006969916.1 response regulatory protein BAC0197 Protein 2e-65 59
BN112_3880 YP_006969916.1 response regulatory protein BAC0083 Protein 7e-61 57
BN112_3880 YP_006969916.1 response regulatory protein BAC0111 Protein 8e-60 57
BN112_3880 YP_006969916.1 response regulatory protein BAC0308 Protein 4e-59 56
BN112_3880 YP_006969916.1 response regulatory protein BAC0638 Protein 3e-53 55
BN112_3880 YP_006969916.1 response regulatory protein BAC0347 Protein 4e-54 54
BN112_3880 YP_006969916.1 response regulatory protein AE000516.2.gene3505. Protein 2e-29 41
BN112_3880 YP_006969916.1 response regulatory protein CP001918.1.gene5135. Protein 4e-21 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BN112_3880 YP_006969916.1 response regulatory protein VFG0596 Protein 1e-55 55
BN112_3880 YP_006969916.1 response regulatory protein VFG1390 Protein 3e-40 44
BN112_3880 YP_006969916.1 response regulatory protein VFG1389 Protein 6e-33 44