Gene Information

Name : Hsero_3954 (Hsero_3954)
Accession : YP_003777333.1
Strain : Herbaspirillum seropedicae SmR1
Genome accession: NC_014323
Putative virulence/resistance : Virulence
Product : NAD-dependent aldehyde dehydrogenase
Function : -
COG functional category : C : Energy production and conversion
COG ID : COG1012
EC number : 1.2.1.3
Position : 4530852 - 4532306 bp
Length : 1455 bp
Strand : +
Note : -

DNA sequence :
ATGTCTCTCCATCTTCAGCACTTTATTGCAGGCGAGGCCACCGAGGCCTCCGACGGCCAGCGCATGAACCTGGTCAATCC
CATCAACGAGGAAATCTACGCCAGTGCAGCGCAAGGCACGGCAGCCGATGTGGCGCGCGCAGTCGCTGCGGCCAAGGCGC
AACTGGAAGGCGGGGCCTGGAGCAAGCTCTCGGGCCTGCAACGCGGACAACTGCTGCACAAGCTGGCGGCGCTGGTCGAG
CGTGATACCGATCTGCTGGCCGACATGGATGCCCGCGCCATCGGCCGCTCGCCCATGGAGCCGCGCATGATGGATGTGCC
CAATGCCATCAGCCATCTGCGCGCTGCGGCCGGCTGGGCCAACCAGATGGAAGGTCGCACCATTCCCACCGCTGGCTATA
TGGGCAAGCCCACCTTGTCCTATACGGTGCGCGAACCGATCGGCGTGGTCGGGGCGATCCTGCCGTGGAATGCGCCGTTG
ATGATCACCAGCTGGAAAGTCGCGGCGCTGCTGGCGGCAGGTTGCACGGTGGTGATCAAGCCGGCTGAGGAAACTCCGCA
GTCGGCGTTGCACCTGGCGCGCCTGGCGCAGGAGGCAGGCTTCCCGGATGGCGTGATCAATGTGGTGACCGGCTATGGCA
ATAGCGTCGGACGCGCCCTGTGCGAGCACCCCGATGTGGCCAAGATCAGCTTTACCGGCAGCCCCGAGGCCGGCCGCGCG
ATCCAGCGCATTGCCGGTGAGCAGTTCAAGCGCGTGACCCTGGAGCTGGGCGGCAAGAGTCCGCAGATCGTCTTTGATGA
CGCGCCTTTCGAGGATGCACTCTTCGGTTGCACCCTGGGCCTGTTCGTCAACCAGGGCCAGGTGTGCGCGGCGGGTTCGC
GCATCCTGGTGCAGCGCAGCCTGGCGCAGCGCTTTGCCAAGGCGCTGGCCGAGGCCGCCGCCGGCATCACGGTGGGCGAT
CCCAGCCAGCCGGGTGTGCGCATGGGGCCAGTGGCCAAGAAGGCCCAGTTCGAGCGCGTGAACCGCTACATCCAGCAAGG
CCTGGATGAGGGCGCCACGCTGCTGGCCGGCGGCGTCTCGCGTCCGGACAAGGGCTGGTTCGTGCAGCCGACCATCTTTG
CCGATGCCAACAATGGCATGAGCATTGCCCGCGAGGAAATCTTCGGGCCGGTGGGCACCATCATCAGCTTCGATACCGAA
GAAGAAGCCATCGCCCTGGCCAATGATTCCAAGTACGGACTGGCCGCTACGGTCTGGACCACCAACCTGGCGCGCGCGCA
TCGCGTGGCTGCGGGTGTGAAGGTGGGTGCGGTGGGCGTCAATTGCTGGAGCCCGCTGGACGCCAACCTGCCCTGGGGCG
GCATCAAGGACAGCGGCATGGGACGCGAAGGCGGTCTGGCCGGTGCACTGGCCTACACCGAAGAAAAGACCGTGACCGTG
CTGCTGGCTTCCTGA

Protein sequence :
MSLHLQHFIAGEATEASDGQRMNLVNPINEEIYASAAQGTAADVARAVAAAKAQLEGGAWSKLSGLQRGQLLHKLAALVE
RDTDLLADMDARAIGRSPMEPRMMDVPNAISHLRAAAGWANQMEGRTIPTAGYMGKPTLSYTVREPIGVVGAILPWNAPL
MITSWKVAALLAAGCTVVIKPAEETPQSALHLARLAQEAGFPDGVINVVTGYGNSVGRALCEHPDVAKISFTGSPEAGRA
IQRIAGEQFKRVTLELGGKSPQIVFDDAPFEDALFGCTLGLFVNQGQVCAAGSRILVQRSLAQRFAKALAEAAAGITVGD
PSQPGVRMGPVAKKAQFERVNRYIQQGLDEGATLLAGGVSRPDKGWFVQPTIFADANNGMSIAREEIFGPVGTIISFDTE
EEAIALANDSKYGLAATVWTTNLARAHRVAAGVKVGAVGVNCWSPLDANLPWGGIKDSGMGREGGLAGALAYTEEKTVTV
LLAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ORF SG19 AAN62241.1 putative aldehyde dehydrogenase Not tested PAGI-3(SG) Protein 1e-63 41
VC0819 NP_230467.2 aldehyde dehydrogenase Not tested VPI-1 Protein 3e-62 41
hpaE AAO17179.1 HpaE Not tested tcd island Protein 2e-66 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Hsero_3954 YP_003777333.1 NAD-dependent aldehyde dehydrogenase VFG0082 Protein 1e-62 41