Gene Information

Name : BN112_3951 (BN112_3951)
Accession : YP_006969987.1
Strain : Bordetella bronchiseptica 253
Genome accession: NC_019382
Putative virulence/resistance : Virulence
Product : two-component response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4239320 - 4239997 bp
Length : 678 bp
Strand : -
Note : -

DNA sequence :
ATGCGCATCCTCGTTATCGAAGACGAGCCCAAGCTGGCCGACTATCTGCACAAGGGCCTGTCCGAGCAAAGCCATATCGT
CGACGTCGCGCGCGACGGCGTCAACGGCCGCCACCTGGCGCTCGAGGGCGACTACGAACTGGTCATCCTCGACGTGATGC
TGCCCGACATCGACGGCTTCGCCGTCCTGGCGGCGCTGCGCGCGGCCGCGCGCAACACGCCGGTGCTGATGCTGACGGCG
CGCGACCGGGTCGAGGACCGCGTGCGCGGGCTGGAAGGCGGCGCCGACGACTACCTGGTCAAGCCGTTCGCGTTCTCCGA
GCTCCTGGCGCGCGTGCATGCGCTGCAGCGGCGCGGGCGCAGCCAGGAATCCACCCTGCTGCGCCTGGCCGACCTGGAGC
TGGACCTGGCCAGCCGCAAGGCGCAGCGCGGCGGACGCCGCCTGGACCTGACGGCCAAGGAGTTCTCGCTGCTGGCGCTG
CTGCTGCGCCGCCAGGGCCAGATCCTGTCGCGCACCACGCTGGCCGAGCAGGTCTGGGACATGAACTTCGACAGCGACAC
CAACGTCATCGACGTCGCCATCCGCCGGTTGCGCGGCAAGCTGGACGACCCCTACGACGCCAAGCTGCTGCATACCGTGC
GCGGCATGGGCTACGTGCTGGAATCGCGCCCGTCATGA

Protein sequence :
MRILVIEDEPKLADYLHKGLSEQSHIVDVARDGVNGRHLALEGDYELVILDVMLPDIDGFAVLAALRAAARNTPVLMLTA
RDRVEDRVRGLEGGADDYLVKPFAFSELLARVHALQRRGRSQESTLLRLADLELDLASRKAQRGGRRLDLTAKEFSLLAL
LLRRQGQILSRTTLAEQVWDMNFDSDTNVIDVAIRRLRGKLDDPYDAKLLHTVRGMGYVLESRPS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 7e-48 55
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-47 53

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BN112_3951 YP_006969987.1 two-component response regulator BAC0197 Protein 2e-54 65
BN112_3951 YP_006969987.1 two-component response regulator BAC0125 Protein 1e-55 62
BN112_3951 YP_006969987.1 two-component response regulator BAC0083 Protein 9e-55 61
BN112_3951 YP_006969987.1 two-component response regulator BAC0638 Protein 2e-47 59
BN112_3951 YP_006969987.1 two-component response regulator BAC0111 Protein 8e-56 57
BN112_3951 YP_006969987.1 two-component response regulator BAC0308 Protein 1e-51 55
BN112_3951 YP_006969987.1 two-component response regulator BAC0347 Protein 3e-48 50
BN112_3951 YP_006969987.1 two-component response regulator AE000516.2.gene3505. Protein 9e-23 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BN112_3951 YP_006969987.1 two-component response regulator VFG0596 Protein 3e-48 55
BN112_3951 YP_006969987.1 two-component response regulator VFG1389 Protein 4e-29 44
BN112_3951 YP_006969987.1 two-component response regulator VFG1390 Protein 5e-35 41