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Name : tir (E2348C_3941) Accession : YP_002331403.1 Strain : Escherichia coli E2348/69 Genome accession: NC_011601 Putative virulence/resistance : Virulence Product : translocated intimin receptor Tir Function : - COG functional category : - COG ID : - EC number : - Position : 4113830 - 4115482 bp Length : 1653 bp Strand : - Note : - DNA sequence : ATGCCTATTGGTAACCTTGGTAATAATGTAAATGGCAATCATTTAATTCCCCCTGCGCCGCCACTACCTTCACAAACAGA CGGCGCGGCACGGGGAGGAACTGGTCATCTAATTAGCTCTACAGGAGCATTAGGATCTCGTTCATTGTTTTCTCCCCTGA GAAATTCTATGGCTGATTCTGTCGATTCCAGAGATATTCCAGGACTTCCTACAAACCCATCGAGGCTTGCTGCAGCTACA TCTGAGACATGCTTGCTTGGAGGATTTGAAGTTCTCCATGATAAGGGGCCACTTGATATTCTCAATACGCAAATTGGACC CTCTGCATTTCGTGTTGAAGTGCAGGCAGATGGTACTCATGCCGCTATTGGAGAAAAAAATGGTTTGGAGGTTAGCGTTA CATTAAGTCCTCAAGAATGGAGCAGCTTGCAATCTATTGATACTGAGGGTAAAAACAGATTTGTTTTTACCGGGGGACGT GGCGGTAGTGGGCATCCGATGGTCACTGTCGCATCAGATATCGCGGAAGCTCGTACGAAAATACTGGCCAAATTAGACCC AGACAATCATGGAGGACGTCAACCCAAGGACGTTGATACGCGTTCTGTTGGTGTTGGCAGCGCTTCGGGAATAGATGATG GCGTTGTTAGCGAAACCCATACTTCAACAACAAATTCCAGCGTTCGCTCAGATCCTAAATTCTGGGTTTCTGTCGGCGCA ATTGCTGCTGGTTTAGCGGGACTGGCGGCAACTGGTATTGCACAGGCGTTGGCTTTGACACCGGAACCGGATGATCCTAC AACCACCGATCCTGATCAGGCCGCAAATGCTGCAGAAAGTGCAACAAAAGATCAGTTAACGCAAGAAGCATTCAAGAACC CTGAGAACCAGAAAGTTAACATCGATGCGAACGGAAATGCTATTCCGTCTGGGGAATTAAAAGATGATATTGTTGAGCAA ATAGCACAACAAGCTAAAGAGGCTGGTGAGGTGGCCAGACAGCAGGCTGTTGAAAGCAATGCACAGGCGCAGCAGCGATA TGAGGATCAGCATGCCAGACGTCAGGAGGAATTACAGCTTTCATCGGGTATTGGTTACGGCCTCAGCAGTGCATTGATTG TTGCTGGGGGAATTGGTGCTGGTGTAACGACTGCGCTCCATAGACGAAATCAGCCGGCAGAACAGACAACTACTACAACA ACACATACGGTAGTGCAGCAACAGACCGGAGGGAATACCCCAGCACAAGGTGGCACTGATGCCACAAGAGCAGAAGACGC TTCTCTGAATAGACGTGATTCGCAGGGGAGTGTTGCATCGACACACTGGTCAGATTCCTCTAGCGAAGTGGTTAATCCAT ATGCTGAAGTTGGGGGGGCTCGGAATAGTCTATCGGCTCATCAGCCAGAAGAGCATATTTATGATGAGGTCGCTGCAGAT CCTGGTTATAGCGTTATTCAGAATTTTTCAGGGAGCGGCCCAGTTACCGGAAGGTTAATAGGAACTCCAGGGCAAGGTAT CCAAAGTACTTATGCGCTTCTGGCAAACAGCGGCGGATTGCGTTTAGGTATGGGAGGATTAACGAGTGGTGGCGAGAGCG CAGTAAGTTCTGTAAATGCCGCACCAACGCCGGGACCAGTACGTTTCGTTTAA Protein sequence : MPIGNLGNNVNGNHLIPPAPPLPSQTDGAARGGTGHLISSTGALGSRSLFSPLRNSMADSVDSRDIPGLPTNPSRLAAAT SETCLLGGFEVLHDKGPLDILNTQIGPSAFRVEVQADGTHAAIGEKNGLEVSVTLSPQEWSSLQSIDTEGKNRFVFTGGR GGSGHPMVTVASDIAEARTKILAKLDPDNHGGRQPKDVDTRSVGVGSASGIDDGVVSETHTSTTNSSVRSDPKFWVSVGA IAAGLAGLAATGIAQALALTPEPDDPTTTDPDQAANAAESATKDQLTQEAFKNPENQKVNIDANGNAIPSGELKDDIVEQ IAQQAKEAGEVARQQAVESNAQAQQRYEDQHARRQEELQLSSGIGYGLSSALIVAGGIGAGVTTALHRRNQPAEQTTTTT THTVVQQQTGGNTPAQGGTDATRAEDASLNRRDSQGSVASTHWSDSSSEVVNPYAEVGGARNSLSAHQPEEHIYDEVAAD PGYSVIQNFSGSGPVTGRLIGTPGQGIQSTYALLANSGGLRLGMGGLTSGGESAVSSVNAAPTPGPVRFV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tir | AAC38390.1 | Tir | Virulence | LEE | Protein | 0.0 | 100 |
| tir | YP_003236081.1 | putative translocated intimin receptor Tir | Not tested | LEE | Protein | 7e-162 | 84 |
| tir | AAY25394.1 | translocated intimin receptor | Virulence | LEE | Protein | 6e-162 | 84 |
| tir | AAY25393.1 | translocated intimin receptor | Virulence | LEE | Protein | 2e-162 | 84 |
| tir | AAY25395.1 | translocated intimin receptor | Virulence | LEE | Protein | 2e-162 | 84 |
| unnamed | AAL06376.1 | translocated intimin receptor Tir | Virulence | LEE | Protein | 3e-142 | 79 |
| tir | YP_003223468.1 | translocated intimin receptor Tir | Virulence | LEE | Protein | 6e-118 | 66 |
| tir | CAI43867.1 | translocated intimin receptor | Not tested | LEE | Protein | 5e-118 | 66 |
| tir | YP_003232160.1 | translocated intimin receptor Tir | Virulence | LEE | Protein | 9e-120 | 66 |
| espE | CAC81869.1 | EspE protein | Virulence | LEE II | Protein | 7e-120 | 66 |
| tir | AAK26722.1 | Tir | Virulence | LEE | Protein | 5e-120 | 66 |
| tir | AAL57549.1 | Tir | Virulence | LEE | Protein | 5e-120 | 66 |
| tir | AAC31506.1 | L0027 | Virulence | LEE | Protein | 7e-105 | 60 |
| tir | AAY25392.1 | translocated intimin receptor | Virulence | LEE | Protein | 7e-105 | 60 |
| tir | ACU09451.1 | translocated intimin receptor protein Tir | Virulence | LEE | Protein | 7e-105 | 60 |
| tir | NP_290261.1 | translocated intimin receptor protein | Not tested | LEE | Protein | 1e-104 | 60 |
| tir | AAY25390.1 | translocated intimin receptor | Virulence | LEE | Protein | 4e-106 | 60 |
| ECs4561 | NP_312588.1 | hypothetical protein | Virulence | LEE | Protein | 1e-104 | 60 |
| tir | AAY25391.1 | translocated intimin receptor | Virulence | LEE | Protein | 4e-106 | 60 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| tir | YP_002331403.1 | translocated intimin receptor Tir | VFG0737 | Protein | 0.0 | 100 |
| tir | YP_002331403.1 | translocated intimin receptor Tir | VFG0805 | Protein | 4e-105 | 60 |
