Gene Information

Name : escC (E2348C_3955)
Accession : YP_002331417.1
Strain : Escherichia coli E2348/69
Genome accession: NC_011601
Putative virulence/resistance : Virulence
Product : T3SS structure protein EscC
Function : -
COG functional category : N : Cell motility
COG ID : COG1450
EC number : -
Position : 4125141 - 4126679 bp
Length : 1539 bp
Strand : +
Note : -

DNA sequence :
ATGAAAAAAATAAGTTTTTTTATTTTTACAGCACTATTTTGCTGCAGTGCACAAGCTGCCCCGTCCTCTCTGGAAAAAAG
ATTAGGCAAGAACGAATATTTTATTATTACTAAAAGTTCTCCAGTACGTGCAATCCTTAATGACTTTGCTGCTAACTACA
GCATTCCTGTTTTCATCAGTAGTTCCGTGAATGATGATTTCTCTGGCGAAATAAAAAATGAAAAACCTGTAAAAGTACTG
GAAAAACTGTCCAAACTCTATCATCTCACATGGTATTATGATGAGAACATCTTGTATATTTATAAAACAAATGAAATATC
AAGAAGTATAATTACACCAACATATCTGGATATTGACTCACTGCTAAAATATCTGAGTGATACAATCTCAGTAAACAAAA
ACTCTTGCAATGTGAGAAAAATTACGACATTTAACTCGATTGAAGTTCGGGGTGTTCCTGAATGTATAAAATATATTACA
TCTTTATCAGAAAGTCTTGATAAAGAGGCACAGTCTAAAGCCAAAAATAAAGATGTTGTTAAGGTCTTTAAACTGAACTA
TGCGTCAGCGACAGATATAACATACAAATACCGTGACCAAAATGTTGTCGTCCCAGGTGTTGTCTCCATTCTGAAGACAA
TGGCAAGTAATGGTTCGCTTCCCAGTACCGGTAAAGGTGCCGTCGAGCGAAGCGGTAACCTGTTTGATAACAGTGTAACG
ATTTCCGCTGATCCACGTCTTAATGCAGTTGTTGTAAAAGACCGCGAAATAACGATGGATATCTATCAGCAATTAATTTC
TGAGCTTGATATTGAACAAAGGCAAATTGAAATTTCTGTCTCAATTATTGATGTTGATGCAAACGATCTTCAGCAGCTCG
GCGTAAACTGGTCCGGTACGTTAAATGCAGGACAAGGTACGATTGCCTTTAATAGCTCTACCGCACAGGCTAATATCAGC
TCTTCTGTGATAAGTAATGCCAGTAATTTTATGATTAGGGTGAATGCGTTACAACAGAACTCGAAAGCTAAAATACTCTC
TCAGCCGTCAATTATAACCTTAAATAATATGCAGGCGATTCTTGATAAAAACGTAACGTTTTATACAAAAGTCTCCGGAG
AAAAGGTGGCGTCTCTGGAAAGTATTACAAGCGGAACATTGCTGAGAGTGACACCACGTATACTTGATGACAGCTCGAAT
AGTCTTACCGGAAAACGTCGGGAACGAGTTCGTTTGTTACTTGATATTCAGGATGGCAATCAATCGACTAACCAAAGCAA
TGCTCAGGATGCCAGCAGCACCTTACCTGAAGTACAAAATTCAGAAATGACAACAGAAGCGACATTAAGTGCAGGAGAAA
GTTTATTACTTGGCGGATTTATCCAAGATAAAGAAAGTTCAAGTAAAGATGGTATACCGCTGTTAAGCGACATTCCTGTT
ATTGGTAGTTTATTCTCCAGTACGGTAAAACAAAAACATAGTGTTGTTCGACTCTTTTTAATTAAAGCAACCCCGATAAA
ATCTGCATCTAGCGAATAA

Protein sequence :
MKKISFFIFTALFCCSAQAAPSSLEKRLGKNEYFIITKSSPVRAILNDFAANYSIPVFISSSVNDDFSGEIKNEKPVKVL
EKLSKLYHLTWYYDENILYIYKTNEISRSIITPTYLDIDSLLKYLSDTISVNKNSCNVRKITTFNSIEVRGVPECIKYIT
SLSESLDKEAQSKAKNKDVVKVFKLNYASATDITYKYRDQNVVVPGVVSILKTMASNGSLPSTGKGAVERSGNLFDNSVT
ISADPRLNAVVVKDREITMDIYQQLISELDIEQRQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSSTAQANIS
SSVISNASNFMIRVNALQQNSKAKILSQPSIITLNNMQAILDKNVTFYTKVSGEKVASLESITSGTLLRVTPRILDDSSN
SLTGKRRERVRLLLDIQDGNQSTNQSNAQDASSTLPEVQNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPV
IGSLFSSTVKQKHSVVRLFLIKATPIKSASSE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ECs4575 NP_312602.1 EscC Virulence LEE Protein 0.0 99
escC AAC38377.1 EscC Virulence LEE Protein 0.0 99
escC AAC31520.1 L0041 Virulence LEE Protein 0.0 99
escC ACU09465.1 type III secretion outer membrane pore YscC/HrcC family Virulence LEE Protein 0.0 99
escC YP_003236095.1 T3SS structure protein EscC Virulence LEE Protein 0.0 99
escC NP_290275.1 hypothetical protein Virulence LEE Protein 0.0 99
escC CAI43881.1 EscC protein Virulence LEE Protein 0.0 98
escC YP_003223482.1 T3SS structure protein EscC Virulence LEE Protein 0.0 98
escC AAK26708.1 EscC Virulence LEE Protein 0.0 98
escC YP_003232146.1 T3SS structure protein EscC Virulence LEE Protein 0.0 98
escC AAL57535.1 EscC Virulence LEE Protein 0.0 98
escC CAC81855.1 EscC protein Virulence LEE II Protein 0.0 98
unnamed AAL06362.1 EscC Virulence LEE Protein 0.0 96
escC AFO66299.1 putative type III complex subunit Virulence SESS LEE Protein 0.0 80
escC AFO66408.1 putative type III complex subunit Virulence SESS LEE Protein 0.0 80
YPO0257 YP_002345337.1 type III secretion protein Virulence Not named Protein 8e-111 49
spiA NP_805065.1 outer membrane secretory protein Virulence SPI-2 Protein 4e-91 44
spiA AAC44301.1 SpiA Virulence SPI-2 Protein 2e-91 44
ssaC YP_216402.1 secretion system apparatus protein SsaC Virulence SPI-2 Protein 3e-91 44
ssaC NP_460359.1 outer membrane secretin precursor Virulence SPI-2 Protein 2e-91 44
spiA NP_456134.1 putative outer membrane secretory protein Virulence SPI-2 Protein 4e-91 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
escC YP_002331417.1 T3SS structure protein EscC VFG0819 Protein 0.0 99
escC YP_002331417.1 T3SS structure protein EscC VFG0723 Protein 0.0 99
escC YP_002331417.1 T3SS structure protein EscC VFG0495 Protein 9e-92 44