Gene Information

Name : escS (E2348C_3962)
Accession : YP_002331424.1
Strain : Escherichia coli E2348/69
Genome accession: NC_011601
Putative virulence/resistance : Virulence
Product : T3SS structure protein EscS
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4794
EC number : -
Position : 4130829 - 4131098 bp
Length : 270 bp
Strand : -
Note : -

DNA sequence :
ATGGATACTGGATATTTTGTTCAATTATGTGTGCAAACGTTCTGGATAATATTTATCCTCTCATTGCCTACAGTCATAGC
GGCCTCTGTTATCGGTATTATTATTAGTCTGGTCCAGGCTATAACGCAGTTACAGGATCAAACATTGCCTTTTTTGCTAA
AAATAATAGCAGTGTTTGCTACGCTTGCCCTGACTTATCACTGGATGGGAACAACAATCATCAACTTCTCGTCGATAATA
TTTGAAATGATTCCGAAGGTGAACGGCTAA

Protein sequence :
MDTGYFVQLCVQTFWIIFILSLPTVIAASVIGIIISLVQAITQLQDQTLPFLLKIIAVFATLALTYHWMGTTIINFSSII
FEMIPKVNG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
escS AAC38370.1 EscS Virulence LEE Protein 3e-30 100
escS AAC31527.1 L0048 Virulence LEE Protein 3e-30 100
escS ACU09472.1 hypothetical protein Not tested LEE Protein 3e-30 100
escS YP_003236102.1 T3SS structure protein EscS Virulence LEE Protein 4e-30 100
escS NP_290282.1 hypothetical protein Virulence LEE Protein 4e-30 100
ECs4582 NP_312609.1 EscS Virulence LEE Protein 4e-30 100
escS YP_003223489.1 T3SS structure protein EscS Virulence LEE Protein 2e-29 97
unnamed AAL06355.1 EscS Virulence LEE Protein 3e-29 97
escS YP_003232139.1 T3SS structure protein EscS Virulence LEE Protein 2e-29 97
escS CAI43888.1 EscS protein Virulence LEE Protein 2e-29 97
escS AAK26701.1 EscS Virulence LEE Protein 1e-29 97
escS AAL57528.1 EscS Virulence LEE Protein 1e-29 97
escS CAC81848.1 EscS protein Virulence LEE II Protein 1e-29 97
escS AFO66341.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 3e-25 84
escS AFO66401.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 3e-25 84
hrcS AAT96263.1 HrcS Virulence S-PAI Protein 7e-07 44
hrcS AAT96304.1 HrcS Virulence S-PAI Protein 7e-07 44
hrcS AAT96344.1 HrcS Virulence S-PAI Protein 7e-07 44
ssaS CAA68200.1 secretion system apparatus, SsaS Virulence SPI-2 Protein 2e-07 43
ssaS YP_216428.1 secretion system apparatus protein SsaS Virulence SPI-2 Protein 3e-07 43
ssaS NP_460385.1 type III secretion system apparatus protein Virulence SPI-2 Protein 3e-07 43
ssaS NP_456108.1 putative type III secretion protein Virulence SPI-2 Protein 3e-07 43
ssaS NP_805091.1 type III secretion protein Virulence SPI-2 Protein 3e-07 43
hrcS ABA47280.1 HrcS Virulence S-PAI Protein 2e-07 43
hrcS AAT96147.1 HrcS Virulence T-PAI Protein 4e-07 43
hrcS AAT96201.1 HrcS Virulence T-PAI Protein 4e-07 43
hrcS NP_791221.1 type III secretion protein HrcS Virulence Hrp PAI Protein 3e-07 43
hrcS AAG33885.1 HrcS Virulence Hrp PAI Protein 2e-07 43
hrpO AAB05076.1 HrpO Virulence Hrp PAI Protein 2e-06 41
hrcS ABQ88360.1 HrcS Virulence Hrp PAI Protein 2e-06 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
escS YP_002331424.1 T3SS structure protein EscS VFG0826 Protein 1e-30 100
escS YP_002331424.1 T3SS structure protein EscS VFG0716 Protein 1e-30 100
escS YP_002331424.1 T3SS structure protein EscS VFG0043 Protein 3e-08 44
escS YP_002331424.1 T3SS structure protein EscS VFG0520 Protein 7e-08 43
escS YP_002331424.1 T3SS structure protein EscS VFG2132 Protein 2e-04 42