Gene Information

Name : tctD (PSTAA_4192)
Accession : YP_005940789.1
Strain : Pseudomonas stutzeri DSM 4166
Genome accession: NC_017532
Putative virulence/resistance : Virulence
Product : transcriptional regulatory protein TctD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4511749 - 4512420 bp
Length : 672 bp
Strand : +
Note : -

DNA sequence : 
ATGCGGATTCTTCTGGTCGAGGATCACCCCCAGCTGGCCGAGAGCGTGGCGCAGGCGCTGCGCGGCGCCGGCTGGACCGT
GGACCTGCTGCACGACGGCATCGCCGCCGACCTGGCGCTGGCCAGCGAGGACTATGCGCTGGCGATTCTCGACGTCGGGC
TGCCGCGGCTGGATGGCTTTCAGGTGCTGGCGCGCCTGCGCGGGCGCGGCAAGACGCTGCCGGTGCTGATGCTCACCGCG
CGCGGTGAGGTCAGCGATCGCGTGCACGGCCTCAACCTAGGTGCCGACGACTACCTGGCCAAGCCGTTCGAGCTGTCCGA
GCTGGAAGCGCGGGTCAAGGCGCTGCTGCGACGCAGCGTCGGCGGCGGCGAGCGCCAGCAGCGCTGCGGTGTACTGGTCT
ACGACCTGGATGCGCGGCGCTTCAGCCTGGCCGACGAGCCGCTGACGCTGACCTCCCGGGAACAGAGCGTGCTCGAGGCA
CTGATCGCCCGTCCCGGCCGGGTGATGAGCAAGGATCAGCTGGCCGCCCAGGTGTTCGGCCTGGACGAGGACGCCAGCGC
CGACGCCATCGAGATCTATGTCTACCGACTGCGCAAGAAGCTCGAGGGCCAACCGGTGCGCATCGTCACCTTCCGCGGCC
TGGGCTACATGCTCGAGGCGCTCGATGGCTGA

Protein sequence : 
MRILLVEDHPQLAESVAQALRGAGWTVDLLHDGIAADLALASEDYALAILDVGLPRLDGFQVLARLRGRGKTLPVLMLTA
RGEVSDRVHGLNLGADDYLAKPFELSELEARVKALLRRSVGGGERQQRCGVLVYDLDARRFSLADEPLTLTSREQSVLEA
LIARPGRVMSKDQLAAQVFGLDEDASADAIEIYVYRLRKKLEGQPVRIVTFRGLGYMLEALDG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 6e-28 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 5e-27 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tctD YP_005940789.1 transcriptional regulatory protein TctD BAC0083 Protein 2e-34 46
tctD YP_005940789.1 transcriptional regulatory protein TctD BAC0638 Protein 3e-32 45
tctD YP_005940789.1 transcriptional regulatory protein TctD BAC0347 Protein 4e-30 42
tctD YP_005940789.1 transcriptional regulatory protein TctD BAC0111 Protein 7e-35 42
tctD YP_005940789.1 transcriptional regulatory protein TctD BAC0197 Protein 2e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tctD YP_005940789.1 transcriptional regulatory protein TctD VFG1390 Protein 1e-32 45
tctD YP_005940789.1 transcriptional regulatory protein TctD VFG0596 Protein 2e-28 42
tctD YP_005940789.1 transcriptional regulatory protein TctD VFG1389 Protein 1e-23 42