Gene Information

Name : ECO55CA74_21180 (ECO55CA74_21180)
Accession : YP_006161341.1
Strain : Escherichia coli RM12579
Genome accession: NC_017656
Putative virulence/resistance : Virulence
Product : Pas
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4390917 - 4392137 bp
Length : 1221 bp
Strand : +
Note : COG0609 ABC-type Fe3+-siderophore transport system, permease component

DNA sequence :
ATGTTATCCTCATATAAAATAAAACTTCTCAATGGTGCGATGCGTAATCGGGAATTACAACTTCCGATGGGAAACCTAAC
GCTAGGTACGGAAGATAACGATATTGTTTACTTTCCCCTTGAACAAGGCCTCAATCAGTTTTTACTTGATATACGTGAGG
AAGGTGTTTTCCTTTTATCTCCGGTTGAATTTTGGATTGATGGGCAACCCACGCCCTATGAAGCAGATAAACCATTACCT
GTCGGAAAGGTTATTGATATAGCGGGATGTTGCTTCATCATTGGTGATATTGACCATTCCTTGCCATTGTCTGATGTGCC
AGAAAGGTTCTCTGCCAAAAGTCGACGCAAAAAACGCCTTATCCTGGCGAGCGTGATTGGTGCTACTTTTGCGTTGTCTG
GTGCCATCGGCAGTTACGTTTTGCTTTCCCCAAAAGCTGAACCCCCAACGTTTACCAGAGCTGATGTATATCAGCAGCTA
AAAGAAAACAAACTTCATGCAATCACTCTGGTATGGCATGGGAAAAATATCGCGCTTTATGGGCGTTGCGAATCAACCAC
GGATTTAACTCCATTTTTTAATTACCTAAAAGAAAAAAATATTTTTTATTACAATAATATCATTTGCAATAACCAAATCA
TATCCGCAATTAATGATGTCTTAACGGAATACGGTTACAAAGATATCATTATTACAAAAGGTAATAAGCCTGGATTCTTT
CTGTTATCGGGATACATTCCCCCTTCACCCAAATGGAGCGAGGTTGAAAATCTGTTACTGAATACGCCAGGAGTTGCAGG
ATGGGAAATACACAACAACAGTAACAATAAAATCAATGAACTGGCATCAGAGTTTAAAAAGAATAAACTAATAAACTATG
TCAATATTTTCAAAAAGAATGATGTCATCATTGTTGCGGGGGAAGTTTCTCAACAGAATGAGAGTAAGATCCTTGCCATT
ATAAATGCAATGAACAAAAATAGTAACGCCAAGATACTCTTTCAGAACATTCAGCCGTACATTTCAGCAGATATTTTCCC
CGGAAAAATACTCAGAATCAGCGGTACGATGAAGAATCCAACAATTGCTCTTGATAATGGCACCAGCCTGGGGATTGGTA
GCATTCTGAAAGGAGGCTATGTCATAGACGCGATTGATCCTAAAGATGGTATCAACATCTCCCGCCCAGACGAATATATA
CATATTCCACTGTCGTATTAA

Protein sequence :
MLSSYKIKLLNGAMRNRELQLPMGNLTLGTEDNDIVYFPLEQGLNQFLLDIREEGVFLLSPVEFWIDGQPTPYEADKPLP
VGKVIDIAGCCFIIGDIDHSLPLSDVPERFSAKSRRKKRLILASVIGATFALSGAIGSYVLLSPKAEPPTFTRADVYQQL
KENKLHAITLVWHGKNIALYGRCESTTDLTPFFNYLKEKNIFYYNNIICNNQIISAINDVLTEYGYKDIIITKGNKPGFF
LLSGYIPPSPKWSEVENLLLNTPGVAGWEIHNNSNNKINELASEFKKNKLINYVNIFKKNDVIIVAGEVSQQNESKILAI
INAMNKNSNAKILFQNIQPYISADIFPGKILRISGTMKNPTIALDNGTSLGIGSILKGGYVIDAIDPKDGINISRPDEYI
HIPLSY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ECs4558 NP_312585.1 EscD Virulence LEE Protein 4e-177 100
escD AAC31503.1 L0024 Virulence LEE Protein 3e-177 100
unnamed ACU09448.1 type III secretion apparatus protein YscD/HrpQ family Virulence LEE Protein 3e-177 100
escD NP_290258.1 hypothetical protein Virulence LEE Protein 4e-177 100
escD CAI43864.1 EscD protein Virulence LEE Protein 1e-174 98
unnamed AAC38402.1 EscD Virulence LEE Protein 8e-173 98
escD AAK26725.1 EscD Virulence LEE Protein 1e-174 98
escD YP_003223465.1 T3SS structure protein EscD Virulence LEE Protein 2e-174 98
escD AAL57552.1 EscD Virulence LEE Protein 1e-174 98
escD YP_003232163.1 T3SS structure protein EscD Virulence LEE Protein 2e-174 98
escD CAC81872.1 EscD protein Virulence LEE II Protein 1e-174 98
escD YP_003236078.1 T3SS structure protein EscD Virulence LEE Protein 7e-170 96
unnamed AAL06379.1 EscD Virulence LEE Protein 3e-166 93
escD AFO66302.1 putative LEE-encoded type III secretion system component Virulence SESS LEE Protein 8e-117 59
escD AFO66391.1 putative LEE-encoded type III secretion system component Virulence SESS LEE Protein 2e-116 58

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECO55CA74_21180 YP_006161341.1 Pas VFG0802 Protein 2e-177 100
ECO55CA74_21180 YP_006161341.1 Pas VFG0740 Protein 5e-173 98