Gene Information

Name : ECO55CA74_21195 (ECO55CA74_21195)
Accession : YP_006161344.1
Strain : Escherichia coli RM12579
Genome accession: NC_017656
Putative virulence/resistance : Virulence
Product : translocated intimin receptor Tir
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4395873 - 4397561 bp
Length : 1689 bp
Strand : -
Note : -

DNA sequence :
ATGCCTATTGGTAATCTTGGTCATAATCCCAATGTGAATAATTCAATTCCTCCTGCACCTCCATTACCTTCACAAACCGA
CGGTGCAGGGGGGCGTGGTCAGCTCATTAACTCTACGGGGCCGTTGGGATCTCGTGCGCTATTTACGCCTGTAAGGAATT
CTATGGCTGATTCTGGCGACAATCGTGCCAGTGATGTTCCTGGACTTCCTGTAAATCCGATGCGCCTGGCGGCGTCTGAG
ATAACACTGAATGATGGATTTGAAGTTCTTCATGATCATGGTCCGCTCGATACTCTTAACAGGCAGATTGGCTCTTCGGT
ATTTCGAGTTGAAACTCAGGAAGATGGTAAACATATTGCTGTCGGTCAGAGGAATGGTGTTGAGACCTCTGTTGTTTTAA
GTGATCAAGAGTACGCTCGCTTGCAGTCCATTGATCCTGAAGGTAAAGACAAATTTGTATTTACTGGAGGCCGTGGTGGT
GCTGGGCATGCTATGGTCACCGTTGCTTCAGATATCACGGAAGCCCGCCAAAGGATACTGGAGCTGTTAGAGCCCAAAGG
GACCGGGGAGTCCAAAGGTGCTGGGGAGTCCAAAGGTGCTGGGGAGTCAAAAGGCGTTGGGGAGTTGAGGGAGTCAAATA
GCGGTGCGGAAAACACCACAGAAACTCAGACCTCAACCTCAACTTCCAGCCTTCGTTCAGATCCTAAACTTTGGTTGGCG
TTGGGGACTGTTGCTACAGGTCTGATAGGGTTGGCGGCGACGGGTATTGTACAGGCGCTTGCATTGACGCCGGAGCCGGA
TAGCCCAACCACGACCGACCCTGATGCAGCTGCAAGTGCAACTGAAACTGCGACAAGAGATCAGTTAACGAAAGAAGCGT
TCCAGAACCCAGATAATCAAAAAGTTAATATCGATGAGCTCGGAAATGCGATTCCGTCAGGGGTATTGAAAGATGATGTT
GTTGCGAATATAGAAGAGCAGGCTAAAGCAGCAGGCGAAGAGGCCAAACAGCAAGCCATTGAAAATAATGCTCAGGCGCA
AAAAAAATATGATGAACAACAAGCTAAACGCCAGGAGGAGCTGAAAGTTTCATCGGGGGCTGGCTACGGTCTTAGTGGCG
CATTGATTCTTGGTGGGGGAATTGGTGTTGCCGTCACCGCTGCGCTTCATCGAAAAAATCAGCCGGTAGAACAAACAACA
ACAACAACTACTACAACTACAAGCGCACGTACGGTAGAGAATAAGCCTGCAAATAATACACCTGCACAGGGCAATGTAGA
TACCCCTGGGTCAGAAGATACCATGGAGAGCAGACGTAGCTCGATGGCTAGCACCTCGTCGACTTTCTTTGACACTTCCA
GCATAGGGACCGTGCAGAATCCGTATGCTGATGTTAAAACATCGCTGCATGATTCGCAGGTGCCGACTTCTAATTCTAAT
ACGTCTGTTCAGAATATGGGGAATACAGATTCTGTTGTATATAGCACCATTCAACATCCTCCCCGGGATACTACTGATAA
CGGCGCACGGTTATTAGGAAATCCAAGTGCGGGGATTCAAAGCACTTATGCGCGTCTGGCGCTAAGTGGTGGATTACGCC
ATGACATGGGAGGATTAACGGGGGGGAGTAATAGCGCTGTGAATACTTCGAATAACCCACCAGCGCCGGGATCCCATCGT
TTCGTCTAA

Protein sequence :
MPIGNLGHNPNVNNSIPPAPPLPSQTDGAGGRGQLINSTGPLGSRALFTPVRNSMADSGDNRASDVPGLPVNPMRLAASE
ITLNDGFEVLHDHGPLDTLNRQIGSSVFRVETQEDGKHIAVGQRNGVETSVVLSDQEYARLQSIDPEGKDKFVFTGGRGG
AGHAMVTVASDITEARQRILELLEPKGTGESKGAGESKGAGESKGVGELRESNSGAENTTETQTSTSTSSLRSDPKLWLA
LGTVATGLIGLAATGIVQALALTPEPDSPTTTDPDAAASATETATRDQLTKEAFQNPDNQKVNIDELGNAIPSGVLKDDV
VANIEEQAKAAGEEAKQQAIENNAQAQKKYDEQQAKRQEELKVSSGAGYGLSGALILGGGIGVAVTAALHRKNQPVEQTT
TTTTTTTSARTVENKPANNTPAQGNVDTPGSEDTMESRRSSMASTSSTFFDTSSIGTVQNPYADVKTSLHDSQVPTSNSN
TSVQNMGNTDSVVYSTIQHPPRDTTDNGARLLGNPSAGIQSTYARLALSGGLRHDMGGLTGGSNSAVNTSNNPPAPGSHR
FV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tir ACU09451.1 translocated intimin receptor protein Tir Virulence LEE Protein 0.0 99
tir NP_290261.1 translocated intimin receptor protein Not tested LEE Protein 0.0 99
ECs4561 NP_312588.1 hypothetical protein Virulence LEE Protein 0.0 99
tir AAC31506.1 L0027 Virulence LEE Protein 0.0 99
tir AAY25390.1 translocated intimin receptor Virulence LEE Protein 0.0 99
tir AAY25391.1 translocated intimin receptor Virulence LEE Protein 0.0 99
tir AAY25392.1 translocated intimin receptor Virulence LEE Protein 0.0 99
tir CAI43867.1 translocated intimin receptor Not tested LEE Protein 1e-113 65
tir YP_003232160.1 translocated intimin receptor Tir Virulence LEE Protein 7e-116 65
tir AAK26722.1 Tir Virulence LEE Protein 2e-115 65
tir AAL57549.1 Tir Virulence LEE Protein 2e-115 65
espE CAC81869.1 EspE protein Virulence LEE II Protein 5e-116 65
tir YP_003223468.1 translocated intimin receptor Tir Virulence LEE Protein 1e-113 65
tir AAC38390.1 Tir Virulence LEE Protein 5e-86 60
tir AAY25394.1 translocated intimin receptor Virulence LEE Protein 2e-81 60
tir YP_003236081.1 putative translocated intimin receptor Tir Not tested LEE Protein 1e-81 59
tir AAY25393.1 translocated intimin receptor Virulence LEE Protein 3e-81 59
tir AAY25395.1 translocated intimin receptor Virulence LEE Protein 3e-81 59
unnamed AAL06376.1 translocated intimin receptor Tir Virulence LEE Protein 1e-79 58

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECO55CA74_21195 YP_006161344.1 translocated intimin receptor Tir VFG0805 Protein 0.0 99
ECO55CA74_21195 YP_006161344.1 translocated intimin receptor Tir VFG0737 Protein 3e-86 60