Gene Information

Name : ECO55CA74_21225 (ECO55CA74_21225)
Accession : YP_006161350.1
Strain : Escherichia coli RM12579
Genome accession: NC_017656
Putative virulence/resistance : Virulence
Product : escN
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4401648 - 4402988 bp
Length : 1341 bp
Strand : -
Note : COG1157 Flagellar biosynthesis/type III secretory pathway ATPase

DNA sequence :
ATGATTTCAGAGCATGATTCTGTATTGGAAAAATACCCACGTATTCAGAAAGTGCTCAATAGCACTGTGCCGGCATTATC
ATTAAATTCGTCTACCAGATATGAAGGCAAGATTATCAATATCGGCGGGACGATTATTAAGGCGCGTTTACCAAAAGCGC
GTATTGGCGCCTTTTATAAGATAGAACCCAGTCAACGTTTAGCCGAGGTGATCGCTATTGATGAAGATGAGGTTTTCTTG
TTGCCTTTTGAGCATGTTTCCGGCATGTACTGTGGTCAGTGGTTAAGTTATCAGGGAGATGAGTTCAAGATTCGTGTTGG
AGACGCACTACTTGGGCGGCTTGTTGATGGCATAGGCAGACCAATGGAGAGTAATATTGCTGCCCCCTATCTTCCGTTTG
AACGCAGCTTGTATGCTGAACCACCAGATCCTTTATTAAGGCAGGTTATTGATCAGCCATTTATACTTGGCGTCAGGGCA
ATTGATGGGCTACTAACTTGCGGTATTGGGCAGCGTATCGGTATTTTTGCTGGTTCAGGCGTTGGTAAAAGTACGCTTTT
GGGGATGATTTGTAATGGCGCATCCGCAGATATTATTGTCCTTGCTCTTATCGGCGAACGTGGTCGCGAAGTAAATGAAT
TCCTCGCGCTCTTACCTCAATCCACGCTTTCTAAATGTGTACTGGTCGTCACAACGTCAGACCGCCCCGCGCTGGAAAGG
ATGAAAGCCGCATTTACGGCGACGACTATTGCAGAGTACTTCCGCGATCAAGGTAAAAATGTATTATTAATGATGGATTC
TGTAACTCGTTATGCCCGAGCCGCACGTGATGTTGGGCTTGCATCGGGAGAACCTGATGTAAGGGGGGGATTCCCTCCGA
GTGTTTTTTCTTCGTTACCCAAATTATTAGAGCGAGCGGGGCCTGCGCCAAAAGGTTCAATAACCGCGATTTATACGGTG
TTGTTAGAAAGCGATAATGTTAATGATCCTATTGGCGATGAAGTCCGCTCTATTCTTGATGGGCACATCGTACTTACCCG
AGAACTTGCAGAGGAAAACCATTTCCCTGCAATTGATATTGGTTTAAGTGCCAGTCGTGTTATGCATAACGTTGTTACAT
CGGAGCATTTGCGTGCGGCGGCAGAATGCAAAAAGCTTATTGCAACTTATAAAAATGTTGAGCTGCTTATTCGTATTGGT
GAGTACACGATGGGGCAAGATCCTGAAGCAGATAAGGCAATAAAAAATAGGAAATTAATTCAGAACTTTATACAACAAAG
CACCAAAGATATCAGTAGTTACGAAAAAACGATTGAAAGCCTATTCAAAGTGGTTGCCTGA

Protein sequence :
MISEHDSVLEKYPRIQKVLNSTVPALSLNSSTRYEGKIINIGGTIIKARLPKARIGAFYKIEPSQRLAEVIAIDEDEVFL
LPFEHVSGMYCGQWLSYQGDEFKIRVGDALLGRLVDGIGRPMESNIAAPYLPFERSLYAEPPDPLLRQVIDQPFILGVRA
IDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDRPALER
MKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAARDVGLASGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTV
LLESDNVNDPIGDEVRSILDGHIVLTRELAEENHFPAIDIGLSASRVMHNVVTSEHLRAAAECKKLIATYKNVELLIRIG
EYTMGQDPEADKAIKNRKLIQNFIQQSTKDISSYEKTIESLFKVVA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
escN AAC31513.1 L0034 Virulence LEE Protein 0.0 100
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 0.0 100
escN NP_290268.1 hypothetical protein Virulence LEE Protein 0.0 100
ECs4568 NP_312595.1 EscN Virulence LEE Protein 0.0 100
escN AAC38383.1 EscN Virulence LEE Protein 0.0 99
escN YP_003236088.1 translocator EscN Virulence LEE Protein 0.0 99
escN YP_003223475.1 translocator EscN Virulence LEE Protein 0.0 97
escN YP_003232153.1 T3SS structure protein EscN Virulence LEE Protein 0.0 97
escN AAK26715.1 EscN Virulence LEE Protein 0.0 97
escN AAL57542.1 EscN Virulence LEE Protein 0.0 97
escN CAI43874.1 EscN protein Virulence LEE Protein 0.0 97
escN CAC81862.1 EscN protein Virulence LEE II Protein 0.0 97
unnamed AAL06369.1 EscN Virulence LEE Protein 0.0 94
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 1e-161 77
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 1e-161 77
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 2e-91 51
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-91 51
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 1e-91 51
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 1e-91 51
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 5e-92 51
lscN AAO18044.1 LscN Virulence TTSS locus Protein 9e-91 51
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-85 51
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 4e-86 51
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 4e-86 51
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 3e-86 51
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 3e-86 51
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 3e-99 50
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 1e-84 50
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 1e-84 50
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 3e-82 49
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 3e-82 49
invC YP_217813.1 ATP synthase SpaL Virulence SPI-1 Protein 4e-71 49
spaI NP_457288.1 secretory apparatus ATP synthase (associated with virulence) Virulence SPI-1 Protein 4e-71 49
spaI NP_806497.1 ATP synthase SpaL Virulence SPI-1 Protein 4e-71 49
invC NP_461815.1 ATP synthase SpaL Virulence SPI-1 Protein 4e-71 49
ECs3730 NP_311757.1 ATP synthase SpaL Not tested LIM Protein 7e-69 49
hrcN ABA47275.1 HrcN Virulence S-PAI Protein 3e-82 47
hrcN AAT96258.1 HrcN Virulence S-PAI Protein 6e-76 47
hrcN AAT96339.1 HrcN Virulence S-PAI Protein 2e-76 47
hrcN AAT96299.1 HrcN Virulence S-PAI Protein 7e-76 47
hrcN AAB06001.1 HrcN Virulence Hrp PAI Protein 5e-72 47
ysaN AAS66842.1 YsaN Not tested SSR-1 Protein 9e-69 47
invC AAS66861.1 InvC Not tested SSR-2 Protein 1e-70 47
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 2e-71 46
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 2e-71 46
hrcN AAR25633.1 type III secretion cytoplasmic ATPase HrcN Not tested Not named Protein 3e-66 46
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 3e-70 44
hrpJ4 AAA81942.1 HrpJ4 Virulence Hrp PAI Protein 1e-66 44
hrcN ABQ88354.1 HrcN Virulence Hrp PAI Protein 1e-66 44
hrcN NP_791227.1 type III secretion cytoplasmic ATPase HrcN Virulence Hrp PAI Protein 5e-70 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECO55CA74_21225 YP_006161350.1 escN VFG0812 Protein 0.0 100
ECO55CA74_21225 YP_006161350.1 escN VFG0730 Protein 0.0 99
ECO55CA74_21225 YP_006161350.1 escN VFG0390 Protein 4e-94 52
ECO55CA74_21225 YP_006161350.1 escN VFG0515 Protein 9e-92 51
ECO55CA74_21225 YP_006161350.1 escN VFG0192 Protein 2e-95 51
ECO55CA74_21225 YP_006161350.1 escN VFG0048 Protein 6e-91 51
ECO55CA74_21225 YP_006161350.1 escN VFG1778 Protein 5e-70 50
ECO55CA74_21225 YP_006161350.1 escN VFG2144 Protein 4e-86 49
ECO55CA74_21225 YP_006161350.1 escN VFG0555 Protein 2e-71 49
ECO55CA74_21225 YP_006161350.1 escN VFG1254 Protein 1e-76 47
ECO55CA74_21225 YP_006161350.1 escN VFG2499 Protein 1e-74 46
ECO55CA74_21225 YP_006161350.1 escN VFG2459 Protein 1e-68 45
ECO55CA74_21225 YP_006161350.1 escN VFG2331 Protein 5e-71 45
ECO55CA74_21225 YP_006161350.1 escN VFG1008 Protein 6e-65 44