Gene Information

Name : ECO55CA74_21230 (ECO55CA74_21230)
Accession : YP_006161351.1
Strain : Escherichia coli RM12579
Genome accession: NC_017656
Putative virulence/resistance : Virulence
Product : escV
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4402972 - 4404999 bp
Length : 2028 bp
Strand : -
Note : COG4789 Type III secretory pathway, component EscV

DNA sequence :
ATGAATAAACTCTTAAATATATTTAAAAAAGCAGAGTCATATCACGATCTTATTCTGGCTCTCTTCTTCTTTATGGCTGT
AATGATGATGATTATTCCACTACCAACAGTTGTGGTGGATATCATTATCGCGATTAATATTTCGACAGCTTTACTTTTAT
TAATGCTCTCAATCTATATAAAAAATCCTCTTGAACTAACTTCTTTCCCCACAATCCTGTTGATTACGACGTTGATGCGC
CTGTCGCTCAGTGTTAGTACAACCAGACTTATTCTGCTGCATCACGATGCGGGTGACATTATTTACTCCTTCGGTAACTT
TGTTGTTGGCGGTAATATTGTTGTTGGCCTGGTTATTTTTACTATTATCACCATTGTTCAATTTATGGTTATTACAAAAG
GGGCCGAGCGTGTTGCTGAAGTGAGTGCTCGTTTTTCCCTTGATGGTATGCCAGGAAAGCAAATGAGTATTGATGGTGAT
ATGCGCGCAGGCGTTATTGACCCGCTTGAGGCAAAAGTTCTTCGCTCCCGAGTGCAAAAGGAAAGCCAGTTTTATGGTTC
AATGGACGGGGCGATGAAGTTTGTAAAAGGGGACGCTATTGCTGGTATCATTATTGTTTTAGTTAACCTTTTTGGTGGCG
TGCTCATTGGTATGTGGCAATTTGACATGCCATTTAGTGCGGCACTTAGCCTGTTTTCTGTATTGTCTGTCGGTGATGCT
TTGGTTGCCCAGATCCCTGCGCTTATTATTTCTGTCACCGCGGGCGTGGTTGTTACTCGTGTGCCCGGTGAAAGCGAAAA
AGAAGAAAACCTTGCAGGTGATATTGTTCAACAGGTTTCTGTTAATAGTCGCCCTTTTTTAATCAGTGCCGCACTAATGC
TCGTAATGGCGATTATTCCGGGCTTTCCTGCATTGGTCTTCTTATTTCTGGCGGTTTGCCTGTTGGGGATAGCCTGGAAA
TTACAGAAGAAAAGAACATTTGGAACTGGCAATAATAAGGATGCTATGGGAGCTGATTTGTCTAATAGCCAAAACATCTC
ACCGGGCGCTGAGCCATTGATTTTAAACTTAAGTAGTAATATTTATAGTTCAGACATTACACAGCAAATTGAGGTCATGC
GTTGGAATTTCTTTGAGGAAAGTGGAATTCCATTGCCTAAGATTATTGTTAATCCGGTTAAAAATAATGATAGCGCAATA
GAATTTTTGCTCTATCAAGAGTCAATATACAAAGATACTCTTATAGATGATACTGTCTATTTTGAGGCTGGGCATGCAGA
GATATCATTCGAATTTGTCCAGGAAAAGCTTTCGACTAACTCTATCGTATATAAGACGAATAAGACTAATCAACAGCTCG
CTCACCTTACAGGTATGGATGTTTATGCAACAACAAATGATAAGATAACGTTTTTGCTAAAGAAACTTGTATTGTCTAAT
GCCAAAGAGTTCATCGGCGTACAAGAAACGCGTTATTTGATGGACATCATGGAGAGAAAATATAACGAGCTTGTGAAAGA
GCTGCAGCGCCAGCTTGGTTTGAGCAAAATTGTTGACATCCTACAACGTCTCGTAGAGGAAAATGTCTCAATTAGAGACC
TGAGAACTATCTTTGAGACGCTTATTTTTTGGTCAACAAAAGAAAAGGATGTGGTTATCTTGTGCGAATACGTTCGTATT
GCCCTGCGTCGGCATATTTTAGGTCGCTATAGCGTTAGCGGTACACTTCTGAACGTTTGGCTTATTGGCTCTGATATTGA
AAATGAGCTACGAGAGTCGATCAGACAAACGTCATCAGGTTCGTATCTGAATATCTCACCGGAGCGAACTGAGCAGATAA
TTGGCTTCTTAAAAAATATCATGAATCCAACGGGGAACGGCGTCATTCTGACCGCTTTAGATATCAGGCGCTATGTGAAG
AAAATGATTGAAGGTTCGTTCCCGTCAGTCCCCGTGCTCTCTTTTCAGGAGGTTGGGAATAATATCGAACTTAAAGTATT
AGGAACGGTAAATGATTTCAGAGCATGA

Protein sequence :
MNKLLNIFKKAESYHDLILALFFFMAVMMMIIPLPTVVVDIIIAINISTALLLLMLSIYIKNPLELTSFPTILLITTLMR
LSLSVSTTRLILLHHDAGDIIYSFGNFVVGGNIVVGLVIFTIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGD
MRAGVIDPLEAKVLRSRVQKESQFYGSMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSAALSLFSVLSVGDA
LVAQIPALIISVTAGVVVTRVPGESEKEENLAGDIVQQVSVNSRPFLISAALMLVMAIIPGFPALVFLFLAVCLLGIAWK
LQKKRTFGTGNNKDAMGADLSNSQNISPGAEPLILNLSSNIYSSDITQQIEVMRWNFFEESGIPLPKIIVNPVKNNDSAI
EFLLYQESIYKDTLIDDTVYFEAGHAEISFEFVQEKLSTNSIVYKTNKTNQQLAHLTGMDVYATTNDKITFLLKKLVLSN
AKEFIGVQETRYLMDIMERKYNELVKELQRQLGLSKIVDILQRLVEENVSIRDLRTIFETLIFWSTKEKDVVILCEYVRI
ALRRHILGRYSVSGTLLNVWLIGSDIENELRESIRQTSSGSYLNISPERTEQIIGFLKNIMNPTGNGVILTALDIRRYVK
KMIEGSFPSVPVLSFQEVGNNIELKVLGTVNDFRA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
escV ACU09459.1 EscV protein Virulence LEE Protein 0.0 100
escV NP_290269.1 hypothetical protein Virulence LEE Protein 0.0 100
ECs4569 NP_312596.1 hypothetical protein Virulence LEE Protein 0.0 100
escV AAC31514.1 L0035 Virulence LEE Protein 0.0 100
escV YP_003236089.1 putative translocator EscV Virulence LEE Protein 0.0 99
escV AAC38382.1 EscV Virulence LEE Protein 0.0 99
escV YP_003223476.1 translocator EscV Virulence LEE Protein 0.0 98
escV YP_003232152.1 T3SS structure protein EscV Virulence LEE Protein 0.0 98
escV CAC81861.1 EscV protein Virulence LEE II Protein 0.0 98
escV CAI43875.1 EscV protein Virulence LEE Protein 0.0 98
escV AAK26714.1 EscV Virulence LEE Protein 0.0 98
escV AAL57541.1 EscV Virulence LEE Protein 0.0 98
unnamed AAL06368.1 EscV Virulence LEE Protein 0.0 95
escV AFO66414.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 0.0 79
escV AFO66296.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 0.0 79
YPO0266 YP_002345347.1 secretion system apparatus protein SsaV Virulence Not named Protein 3e-116 49
ssaV NP_456114.1 putative type III secretion protein Virulence SPI-2 Protein 3e-123 49
ssaV NP_805085.1 secretion system apparatus protein SsaV Virulence SPI-2 Protein 3e-123 49
ssaV CAA70536.1 secretion system apparatus Virulence SPI-2 Protein 9e-124 49
ssaV NP_460379.1 secretion system apparatus protein SsaV Virulence SPI-2 Protein 1e-123 49
ssaV YP_216422.1 secretion system apparatus protein SsaV Virulence SPI-2 Protein 1e-123 49
lssD AAO18050.1 LssD Virulence TTSS locus Protein 1e-103 42
ECs3731 NP_311758.1 EivA Not tested LIM Protein 1e-83 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECO55CA74_21230 YP_006161351.1 escV VFG0813 Protein 0.0 100
ECO55CA74_21230 YP_006161351.1 escV VFG0729 Protein 0.0 99
ECO55CA74_21230 YP_006161351.1 escV VFG0514 Protein 5e-124 49
ECO55CA74_21230 YP_006161351.1 escV VFG1780 Protein 3e-89 41
ECO55CA74_21230 YP_006161351.1 escV VFG1006 Protein 5e-87 41
ECO55CA74_21230 YP_006161351.1 escV VFG0064 Protein 3e-102 41