Gene Information

Name : Gbro_4258 (Gbro_4258)
Accession : YP_003275297.1
Strain : Gordonia bronchialis DSM 43247
Genome accession: NC_013441
Putative virulence/resistance : Virulence
Product : response regulator receiver
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4561998 - 4562660 bp
Length : 663 bp
Strand : -
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: sfu:Sfum_2007 transcriptional regulator

DNA sequence :
ATGAGCCGCATCCTGATTGCCGAGGACGACGTCCAGATCGCGTCGTTCGTCGGGAAGGGTTTGCGCGCGGCCGGCTACAC
CGTGGAGCACGTCGCCGACGGGGAGACCGCCCTGCTGATGGGCCGCAGCCCCGAGATCGACATGATCCTCCTCGACATCG
GACTGCCCGCGATGGACGGATTCAGTGTCCTGCAGCAACTGCGCGGCGAGGGGGTGTCCACCCCGGTGGTGGTGCTGACC
GCCCGCGACAGCGTCACCGATACGGTCGCCGGACTCGAGGGCGGTGCCAACGACTACATGACCAAGCCGTTTCAGTTCGC
TGAGCTCCTCGCCCGGGTCAGGCTGCGACTCCACCACGACGCACCCGCCGCCGGCTCCGAGACCTCGTTGGCGACAGGCG
ATCTGCGGCTGGATCTGCGGTCGCGACGCGTGCAGGTCGGTTCGGACACGATCGATCTCACCGCCCGTGAGTTCGCGCTG
CTCGAGGTATTCCTCCGCCACCCCGACCAGGTGCTCTCCCGCGAGCAGATCCTCGGACACGTCTGGGGGTACGACTTCGA
CCCGGCCTCCAACGTCGTCGACGTCTACGTTCGCGCGCTGCGCACCAAGATCGGCGCCCAGCGTCTGGAAACCGTGCGTG
GCATGGGGTATCGCCTGCGCTGA

Protein sequence :
MSRILIAEDDVQIASFVGKGLRAAGYTVEHVADGETALLMGRSPEIDMILLDIGLPAMDGFSVLQQLRGEGVSTPVVVLT
ARDSVTDTVAGLEGGANDYMTKPFQFAELLARVRLRLHHDAPAAGSETSLATGDLRLDLRSRRVQVGSDTIDLTAREFAL
LEVFLRHPDQVLSREQILGHVWGYDFDPASNVVDVYVRALRTKIGAQRLETVRGMGYRLR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-38 44
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-37 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Gbro_4258 YP_003275297.1 response regulator receiver BAC0197 Protein 8e-40 46
Gbro_4258 YP_003275297.1 response regulator receiver BAC0638 Protein 3e-36 46
Gbro_4258 YP_003275297.1 response regulator receiver BAC0125 Protein 1e-41 44
Gbro_4258 YP_003275297.1 response regulator receiver BAC0083 Protein 7e-43 44
Gbro_4258 YP_003275297.1 response regulator receiver BAC0347 Protein 2e-40 43
Gbro_4258 YP_003275297.1 response regulator receiver HE999704.1.gene1528. Protein 4e-33 42
Gbro_4258 YP_003275297.1 response regulator receiver BAC0111 Protein 1e-40 42
Gbro_4258 YP_003275297.1 response regulator receiver BAC0308 Protein 4e-37 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Gbro_4258 YP_003275297.1 response regulator receiver VFG1389 Protein 9e-40 47
Gbro_4258 YP_003275297.1 response regulator receiver VFG1390 Protein 2e-39 46
Gbro_4258 YP_003275297.1 response regulator receiver VFG0596 Protein 8e-39 44