Gene Information

Name : intL (G2583_4396)
Accession : YP_003501848.1
Strain : Escherichia coli CB9615
Genome accession: NC_013941
Putative virulence/resistance : Unknown
Product : CP4-like integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 4470932 - 4472185 bp
Length : 1254 bp
Strand : +
Note : -

DNA sequence :
TTGGGGGTATCAGGTTGGTTACTGGCGGAAATTCCCCCAGGAGGATGGATTCATCAAAAGCTGGAGGATGTCATGGCGCT
AACCGATGTTAAAGTGAAAACCGCGAAGCCAAAAGAAAGGCCCTATAAGCTGGCTGATGGCGGAGGTATGTATCTGCTGA
TTAACGCTAATGGTTCCAAATACTGGCGTATGAAGTACCGCTTCGCCGGTAAAGAAAAGATGCTGTCTATTGGCGTATAC
CCCGATGTAACGCTTGCCGACGCACGTGAGAAACGCAGTGAAGCCAGGAAAATACTTGCGGCTGGTGGCGATCCGGGTGA
GGCAAAAAAAGAAGAAAAAATAGCGCTGCAAATGAGTTTGAAAAACACTTTCGAGGCCGTTGCTCGCGAGTGGCATCAGA
CGAAAGCCGATCGCTGGTCACTGCGCTACCGCGATGAAATAATCGACACCTTTGAGAAAGATATCTTCCCCTACATCGGC
AAGCGACCTATTGCCGAAATCAAGCCGATGGAGCTATTGGAAGCACTACGTAAGATGGAGAAACGTGGAGCACTGGAGAA
AATGCGCAAGGTCCGCCAACGTTGTGGTGAGGTGTTTCGCTATGCAATTGTTACTGGTCGAGCCGACTATAACCCTGCTC
CCGATCTTGCCAGTGCTTTAGCTACACCGAAAAAAGTACATTTTCCCTTTCTTACTGCCAATGAACTTCCCCACTTCCTT
ACTGATCTGGCGGGTTATACCGGAAGTATCATCACTAAGACAGCTACTCAGATCATTATGTTAACCGGTGTACGAACGCA
AGAGTTGCGTTTCGCGCATTGGGAGGATATTGATTTTGAGGCAAAATTATGGGAGATCCCGGCAGAAGTAATGAAGATGA
AACGGCCTCATATTGTGCCGCCCTCTGAGCAGGTTATTGCGCTATTTAAGCAACTTGAACCAATCTCAAAACATCATCCT
CTGGTCTTTATCGGTAGGAACGATCCTCGCAAGCCAATTAGTAAGGAGAGCATTAACCAGGTCATTGAATTGCTGGGGTA
TAAGGGAAGACTCACAGGGCACGGTTTCAGGCATACCATGAGCACAATTCTGCACGAACAAGGCTTTAATTCTGCCTGGA
TTGAAATGCAGTTGGCTCATGTGGATAAAAACTCCATCAGGGGTACCTATAACCACGCCCAGTATCTCGATGGTCGCCGT
GAAATGATGCAATGGTACGCTGACTACATTGATTCACTTTCTGAGCTGGCCTGA

Protein sequence :
MGVSGWLLAEIPPGGWIHQKLEDVMALTDVKVKTAKPKERPYKLADGGGMYLLINANGSKYWRMKYRFAGKEKMLSIGVY
PDVTLADAREKRSEARKILAAGGDPGEAKKEEKIALQMSLKNTFEAVAREWHQTKADRWSLRYRDEIIDTFEKDIFPYIG
KRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFL
TDLAGYTGSIITKTATQIIMLTGVRTQELRFAHWEDIDFEAKLWEIPAEVMKMKRPHIVPPSEQVIALFKQLEPISKHHP
LVFIGRNDPRKPISKESINQVIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNSIRGTYNHAQYLDGRR
EMMQWYADYIDSLSELA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int AAC31482.1 CP4-like integrase Not tested LEE Protein 0.0 100
int ACU09430.1 integrase Not tested LEE Protein 0.0 100
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 0.0 100
ECs4534 NP_312561.1 integrase Not tested LEE Protein 0.0 100
int CAC39282.1 integrase Not tested LPA Protein 0.0 97
aec33 AAW51716.1 Int Not tested AGI-3 Protein 0.0 97
int AAD44730.1 Int Not tested SHI-2 Protein 3e-180 96
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 9e-180 96
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 9e-180 96
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 6e-180 96
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 8e-125 63
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 1e-125 63
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 4e-73 43
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 1e-79 43
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 1e-79 43
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 2e-82 41
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 2e-82 41
int AAK16198.1 Int Not tested PAI-I AL862 Protein 3e-82 41
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 3e-82 41
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 2e-82 41
int AAL51028.1 CP4-like integrase Not tested LEE Protein 2e-82 41
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 3e-82 41
int-phe AAL60261.1 Int-phe Not tested LEE Protein 2e-82 41
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 3e-82 41
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 1e-74 41
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 1e-82 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
intL YP_003501848.1 CP4-like integrase VFG0783 Protein 0.0 100
intL YP_003501848.1 CP4-like integrase VFG0598 Protein 4e-180 96
intL YP_003501848.1 CP4-like integrase VFG0626 Protein 7e-83 41
intL YP_003501848.1 CP4-like integrase VFG1536 Protein 8e-75 41