Gene Information

Name : CDCO157_4272 (CDCO157_4272)
Accession : YP_006315138.1
Strain : Escherichia coli Xuzhou21
Genome accession: NC_017906
Putative virulence/resistance : Unknown
Product : putative integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4508317 - 4509498 bp
Length : 1182 bp
Strand : +
Note : -

DNA sequence :
ATGGCGCTAACCGATGTTAAAGTGAAAACCGCGAAGCCAAAAGAAAGGCCCTATAAGCTGGCTGATGGCGGAGGTATGTA
TCTGCTGATTAACGCTAATGGTTCCAAATACTGGCGTATGAAGTACCGCTTCGCCGGTAAAGAAAAGATGCTGTCTATTG
GCGTATACCCCGATGTAACGCTTGCCGACGCACGTGAGAAACGCAGTGAAGCCAGGAAAATACTTGCGGCTGGTGGCGAT
CCGGGTGAGGCAAAAAAAGAAGAAAAAATAGCGCTGCAAATGAGTTTGAAAAACACTTTCGAGGCCGTTGCTCGCGAGTG
GCATCAGACGAAAGCCGATCGCTGGTCACTGCGCTACCGCGATGAAATAATCGACACCTTTGAGAAAGATATCTTCCCCT
ACATCGGCAAGCGACCTATTGCCGAAATCAAGCCGATGGAGCTATTGGAAGCACTACGTAAGATGGAGAAACGTGGAGCA
CTGGAGAAAATGCGCAAGGTCCGCCAACGTTGTGGTGAGGTGTTTCGCTATGCAATTGTTACTGGTCGAGCCGACTATAA
CCCTGCTCCCGATCTTGCCAGTGCTTTAGCTACACCGAAAAAAGTACATTTTCCCTTTCTTACTGCCAATGAACTTCCCC
ACTTCCTTACTGATCTGGCGGGTTATACCGGAAGTATCATCACTAAGACAGCTACTCAGATCATTATGTTAACCGGTGTA
CGAACGCAAGAGTTGCGTTTCGCGCATTGGGAGGATATTGATTTTGAGGCAAAATTATGGGAGATCCCGGCAGAAGTAAT
GAAGATGAAACGGCCTCATATTGTGCCGCCCTCTGAGCAGGTTATTGCGCTATTTAAGCAACTTGAACCAATCTCAAAAC
ATCATCCTCTGGTCTTTATCGGTAGGAACGATCCTCGCAAGCCAATTAGTAAGGAGAGCATTAACCAGGTCATTGAATTG
CTGGGGTATAAGGGAAGACTCACAGGGCACGGTTTCAGGCATACCATGAGCACAATTCTGCACGAACAAGGCTTTAATTC
TGCCTGGATTGAAATGCAGTTGGCTCATGTGGATAAAAACTCCATCAGGGGTACCTATAACCACGCCCAGTATCTCGATG
GTCGCCGTGAAATGATGCAATGGTACGCTGACTACATTGATTCACTTTCTGAGCTGGCCTGA

Protein sequence :
MALTDVKVKTAKPKERPYKLADGGGMYLLINANGSKYWRMKYRFAGKEKMLSIGVYPDVTLADAREKRSEARKILAAGGD
PGEAKKEEKIALQMSLKNTFEAVAREWHQTKADRWSLRYRDEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGA
LEKMRKVRQRCGEVFRYAIVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLTDLAGYTGSIITKTATQIIMLTGV
RTQELRFAHWEDIDFEAKLWEIPAEVMKMKRPHIVPPSEQVIALFKQLEPISKHHPLVFIGRNDPRKPISKESINQVIEL
LGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNSIRGTYNHAQYLDGRREMMQWYADYIDSLSELA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int AAC31482.1 CP4-like integrase Not tested LEE Protein 0.0 100
int ACU09430.1 integrase Not tested LEE Protein 0.0 100
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 0.0 100
ECs4534 NP_312561.1 integrase Not tested LEE Protein 0.0 100
int CAC39282.1 integrase Not tested LPA Protein 0.0 97
int AAD44730.1 Int Not tested SHI-2 Protein 1e-180 96
aec33 AAW51716.1 Int Not tested AGI-3 Protein 0.0 96
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 4e-180 96
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 4e-180 96
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 3e-180 96
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 5e-125 63
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 5e-126 63
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 1e-73 43
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 2e-80 43
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 2e-80 43
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 3e-83 41
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 3e-83 41
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 6e-83 41
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 3e-83 41
int AAL51028.1 CP4-like integrase Not tested LEE Protein 3e-83 41
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 4e-83 41
int-phe AAL60261.1 Int-phe Not tested LEE Protein 3e-83 41
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 4e-83 41
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 3e-75 41
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 3e-83 41
int AAK16198.1 Int Not tested PAI-I AL862 Protein 6e-83 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CDCO157_4272 YP_006315138.1 putative integrase VFG0783 Protein 0.0 100
CDCO157_4272 YP_006315138.1 putative integrase VFG0598 Protein 2e-180 96
CDCO157_4272 YP_006315138.1 putative integrase VFG0626 Protein 1e-83 41
CDCO157_4272 YP_006315138.1 putative integrase VFG1536 Protein 2e-75 41