Gene Information

Name : CDCO157_4296 (CDCO157_4296)
Accession : YP_006315162.1
Strain : Escherichia coli Xuzhou21
Genome accession: NC_017906
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4529006 - 4529623 bp
Length : 618 bp
Strand : -
Note : -

DNA sequence :
ATGTTTAGTCCAATGACAATGACAATGGCAGGCAGATCGTTAGTTCAGGCGACTGCACAGACGCTTAAACCTGCGGTTAC
CAGAGCTGCAATGCAAGCGGGTACGGGAGCCACGGGTATGAGGTTCATGCCCGTGCAGTCGAACTTTGTGATTAATCATG
GCAAACTGACTAACCAACTCCTGCAGGCTGTAGCCAAACAAACTCGTAATGGCGATACCCAACAATGGTTCCAGCAGGAG
CAGACGACTTATATATCCAGAACAGTAAATAGAACTCTGGATGACTATTGCAGGAGTAATAATTCGGTCATTAGTAAGGA
GACTAAAGGTCACATTTTTAGAGCTGTTGAAAATGCGTTACAGCAACCTCTTGATATGAACGGGGCACAATCATCAATTG
GTCACTTCTTGCAGTCCAATAAATACTTTAATCAGAAAGTTGATGAGCAGTGCGGCAAAAGAGTGGATCCAATAACACGT
TTTAACACCCAGACGAAGATGATAGAACAAGTCTCACAAGAAATATTTGAACGCAACTTTAGCGGCTTCAAAGTCAGTGA
GATAAAAGCGATTACTCAGAATGCGATTTTAGAGCATGTACAGGATACCCGATTGTAG

Protein sequence :
MFSPMTMTMAGRSLVQATAQTLKPAVTRAAMQAGTGATGMRFMPVQSNFVINHGKLTNQLLQAVAKQTRNGDTQQWFQQE
QTTYISRTVNRTLDDYCRSNNSVISKETKGHIFRAVENALQQPLDMNGAQSSIGHFLQSNKYFNQKVDEQCGKRVDPITR
FNTQTKMIEQVSQEIFERNFSGFKVSEIKAITQNAILEHVQDTRL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAC31507.1 L0028 Not tested LEE Protein 2e-83 99
Z5113 NP_290262.1 hypothetical protein Not tested LEE Protein 3e-83 99
unnamed ACU09452.1 IpaB/EvcA family protein Not tested LEE Protein 2e-83 99
ECs4562 NP_312589.1 hypothetical protein Not tested LEE Protein 3e-83 99
unnamed AAK26721.1 unknown Not tested LEE Protein 3e-71 80
unnamed AAL57548.1 unknown Not tested LEE Protein 3e-71 80
map YP_003223469.1 T3SS effector Map Virulence LEE Protein 2e-70 80
st30 CAC81868.1 ST30 protein Not tested LEE II Protein 3e-71 80
map YP_003232159.1 T3SS effector Map Virulence LEE Protein 5e-71 80
unnamed CAI43868.1 hypothetical protein Not tested LEE Protein 1e-70 80
map YP_003236082.1 T3SS secreted effector Map Virulence LEE Protein 7e-63 77
unnamed AAC38389.1 Orf19 Not tested LEE Protein 1e-63 74
unnamed AAL06375.1 unknown Virulence LEE Protein 4e-61 72

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CDCO157_4296 YP_006315162.1 hypothetical protein VFG0806 Protein 1e-83 99
CDCO157_4296 YP_006315162.1 hypothetical protein VFG0736 Protein 5e-64 74