Gene Information

Name : ECs4562 (ECs4562)
Accession : NP_312589.1
Strain : Escherichia coli Sakai
Genome accession: NC_002695
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4602030 - 4602641 bp
Length : 612 bp
Strand : -
Note : similar to L0028 [Escherichia coli O157:H7 strain EDL933] gi|3414896|gb|AAC31507.1|, hypothetical protein [Escherichia coli] gi|3249026|gb|AAC69313.1|

DNA sequence :
ATGTTTAGTCCAATGACAATGGCAGGCAGATCGTTAGTTCAGGCGACTGCACAGACGCTTAAACCTGCGGTTACCAGAGC
TGCAATGCAAGCGGGTACGGGAGCCACGGGTATGAGGTTCATGCCCGTGCAGTCGAACTTTGTGATTAATCATGGCAAAC
TGACTAACCAACTCCTGCAGGCTGTAGCCAAACAAACTCGTAATGGCGATACCCAACAATGGTTCCAGCAGGAGCAGACG
ACTTATATATCCAGAACAGTAAATAGAACTCTGGATGACTATTGCAGGAGTAATAATTCGGTCATTAGTAAGGAGACTAA
AGGTCACATTTTTAGAGCTGTTGAAAATGCGTTACAGCAACCTCTTGATATGAACGGGGCACAATCATCAATTGGTCACT
TCTTGCAGTCCAATAAATACTTTAATCAGAAAGTTGATGAGCAGTGCGGCAAAAGAGTGGATCCAATAACACGTTTTAAC
ACCCAGACGAAGATGATAGAACAAGTCTCACAAGAAATATTTGAACGCAACTTTAGCGGCTTCAAAGTCAGTGAGATAAA
AGCGATTACTCAGAATGCGATTTTAGAGCATGTACAGGATACCCGATTGTAG

Protein sequence :
MFSPMTMAGRSLVQATAQTLKPAVTRAAMQAGTGATGMRFMPVQSNFVINHGKLTNQLLQAVAKQTRNGDTQQWFQQEQT
TYISRTVNRTLDDYCRSNNSVISKETKGHIFRAVENALQQPLDMNGAQSSIGHFLQSNKYFNQKVDEQCGKRVDPITRFN
TQTKMIEQVSQEIFERNFSGFKVSEIKAITQNAILEHVQDTRL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAC31507.1 L0028 Not tested LEE Protein 1e-84 100
Z5113 NP_290262.1 hypothetical protein Not tested LEE Protein 2e-84 100
unnamed ACU09452.1 IpaB/EvcA family protein Not tested LEE Protein 1e-84 100
ECs4562 NP_312589.1 hypothetical protein Not tested LEE Protein 2e-84 100
unnamed CAI43868.1 hypothetical protein Not tested LEE Protein 5e-72 81
unnamed AAK26721.1 unknown Not tested LEE Protein 1e-72 81
unnamed AAL57548.1 unknown Not tested LEE Protein 1e-72 81
map YP_003223469.1 T3SS effector Map Virulence LEE Protein 7e-72 81
st30 CAC81868.1 ST30 protein Not tested LEE II Protein 1e-72 81
map YP_003232159.1 T3SS effector Map Virulence LEE Protein 2e-72 81
map YP_003236082.1 T3SS secreted effector Map Virulence LEE Protein 3e-64 78
unnamed AAC38389.1 Orf19 Not tested LEE Protein 5e-65 75
unnamed AAL06375.1 unknown Virulence LEE Protein 2e-62 72

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECs4562 NP_312589.1 hypothetical protein VFG0806 Protein 5e-85 100
ECs4562 NP_312589.1 hypothetical protein VFG0736 Protein 2e-65 75