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Name : gabD (T1E_4646) Accession : YP_006535267.1 Strain : Pseudomonas putida DOT-T1E Genome accession: NC_018220 Putative virulence/resistance : Unknown Product : Succinate-semialdehyde dehydrogenase [NADP+] Function : - COG functional category : - COG ID : - EC number : - Position : 5080398 - 5081840 bp Length : 1443 bp Strand : - Note : - DNA sequence : ATGCAGCTCAAAGACGCTCAGTTGTTCCGCCAGCAAGCCTATATCAATGGTGAGTGGCTGGATGCGGACAACGGCCAGAC CATCAAGGTGACCAACCCGGCCACCGGCGAAGTCATCGGTACCGTGCCGAAGATGGGCACCGCGGAAACTCGCCGTGCCA TCGAAGCCGCCGACAAGGCCCTGCCGGCCTGGCGTGCCCTGACTGCGAAAGAGCGCTCGGCCAAGCTGCGTCGCTGGTTC GAACTGATGATCGAGAACCAGGACGACCTGGCTCGCTTGATGACCACCGAACAGGGCAAGCCGCTGGCCGAAGCCAAGGG CGAAATCGCCTACGCGGCCTCGTTCATCGAGTGGTTCGCCGAAGAAGCCAAGCGCATCTACGGTGACACCATCCCAGGCC ACCAGCCAGACAAGCGCCTGATTGTCATCAAGCAGCCAATCGGCGTTACCGCGGCCATCACCCCGTGGAACTTCCCGGCC GCCATGATCACCCGTAAAGCCGGCCCGGCCCTGGCCGCTGGCTGCACCATGGTCCTCAAGCCGGCTTCGCAAACCCCATA CTCCGCTCTGGCCCTGGTCGAGCTGGCCCACCGTGCCGGCATCCCGGCTGGCGTGCTGAGTGTGGTGACCGGCAGCGCCG GCGAAGTTGGCGGCGAACTGACCGGCAACTCCCTGGTACGCAAGCTGTCCTTCACCGGCTCGACCGAAATCGGTCGCCAG CTGATGGAAGAATGCGCCAAGGACATCAAGAAGGTTTCCCTGGAGCTGGGTGGCAACGCCCCGTTCATCGTGTTCGACGA CGCCGACCTGGACAAGGCGGTCGAGGGCGCGATCATCTCCAAGTACCGTAACAACGGCCAGACCTGCGTCTGCGCCAACC GTATCTACGTGCAGGACGGCGTCTACGACGCGTTCGCCCAGAAGCTGGCCGCTGCAGTTGCCAAGCTGAAGATCGGTAAC GGCCTGGAAGAAGGCACCACCACTGGCCCGCTGATCGACGGCAAGGCTGTCGCCAAGGTCCAGGAGCACATCGAGGACGC CGTCAGCAAAGGCGCCAAAGTGCTGTCCGGTGGCAAGCTGATCGAAGGCAACTTCTTCGAGCCGACCATCCTGGTTGACG TACCGAAGACCGCTGCTGTCGCCAAGGAAGAGACGTTCGGCCCACTGGCGCCGCTGTTCCGCTTCAAAGACGAAGCCGAA GTCATCGCCATGTCCAACGACACCGAGTTCGGCCTGGCCTCGTACTTCTACGCCCGCGACATGAGCCGTGTGTTCCGTGT CGCCGAAGCCCTGGAGTACGGCATGGTGGGTATCAACACCGGCCTGATCTCCAACGAAGTGGCGCCGTTCGGTGGTATCA AGGCTTCGGGCCTGGGCCGCGAAGGTTCCAAGTACGGTATCGAGGACTACCTCGAAATCAAATACCTGTGCATCAGCGTC TGA Protein sequence : MQLKDAQLFRQQAYINGEWLDADNGQTIKVTNPATGEVIGTVPKMGTAETRRAIEAADKALPAWRALTAKERSAKLRRWF ELMIENQDDLARLMTTEQGKPLAEAKGEIAYAASFIEWFAEEAKRIYGDTIPGHQPDKRLIVIKQPIGVTAAITPWNFPA AMITRKAGPALAAGCTMVLKPASQTPYSALALVELAHRAGIPAGVLSVVTGSAGEVGGELTGNSLVRKLSFTGSTEIGRQ LMEECAKDIKKVSLELGGNAPFIVFDDADLDKAVEGAIISKYRNNGQTCVCANRIYVQDGVYDAFAQKLAAAVAKLKIGN GLEEGTTTGPLIDGKAVAKVQEHIEDAVSKGAKVLSGGKLIEGNFFEPTILVDVPKTAAVAKEETFGPLAPLFRFKDEAE VIAMSNDTEFGLASYFYARDMSRVFRVAEALEYGMVGINTGLISNEVAPFGGIKASGLGREGSKYGIEDYLEIKYLCISV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| orf17 | AAO17183.1 | Orf17 | Not tested | tcd island | Protein | 3e-155 | 68 |
| hpaE | AAO17179.1 | HpaE | Not tested | tcd island | Protein | 7e-69 | 41 |
| cur_1509 | YP_001800903.1 | NAD-dependent aldehyde dehydrogenase | Not tested | Not named | Protein | 3e-86 | 41 |
