Gene Information

Name : irlR4 (AXYL_04680)
Accession : YP_003980709.1
Strain : Achromobacter xylosoxidans A8
Genome accession: NC_014640
Putative virulence/resistance : Virulence
Product : transcriptional activator protein IrlR 4
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4995606 - 4996295 bp
Length : 690 bp
Strand : +
Note : -

DNA sequence : 
ATGAAAGTACTCGTAATCGAAGACGAAAAAAAACTCGCCGAGTACTTGCGGCGAGCGCTGACCGAACACAACTACGTCGT
CGACGTGGCCCTGGACGGCGTCACCGGCCTTCATCTGGTCCGTGAAAGCCAATATGATCTGGTCCTGCTGGACGTGATGC
TGCCGGCCATGGACGGTTTTTCCGTGCTGGCCGAGATCCGCAAGACCAGCCGCGTCCCCGTCCTGATGCTGACCGCGCGC
GACAAGCTCGAAGACCGGGTCAAGGGCCTGCGCGACGGCGCCGACGACTACCTGGCCAAACCGTTCGCCTTGTCGGAGCT
GCTGGCCCGCGTGCTGGCGCTGGGCCGGCGCAGCGGCCACGGCCAGACCGAAACCATCGCCCAGAACGTGCTGCGCATCG
ACGGGCTGGAGCTGGACCTGCTGCGCCGGCGCGCCAGCCGCGACGGCGTGCGGCTGGACCTGACCGCCAAGGAATTCACC
TTGCTGGCGCTGCTGATGCGCAAGCAGGGAGAAGTCCTGTCGCGGCTGGAGCTGGCCGAACAGGTGTGGGACATCAACTT
CAACAGCAACACCAACGTGGTCGAGGTCGCGATCCGCCGCCTGCGCGGCAAGGTCGACGAACCCTTCGACAAGAAGCTGT
TGCATACCGTGCGCGGCATGGGCTACGTGCTGGAACCGCGGAGCGACTGA

Protein sequence : 
MKVLVIEDEKKLAEYLRRALTEHNYVVDVALDGVTGLHLVRESQYDLVLLDVMLPAMDGFSVLAEIRKTSRVPVLMLTAR
DKLEDRVKGLRDGADDYLAKPFALSELLARVLALGRRSGHGQTETIAQNVLRIDGLELDLLRRRASRDGVRLDLTAKEFT
LLALLMRKQGEVLSRLELAEQVWDINFNSNTNVVEVAIRRLRGKVDEPFDKKLLHTVRGMGYVLEPRSD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 9e-54 52
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-53 51

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
irlR4 YP_003980709.1 transcriptional activator protein IrlR 4 BAC0083 Protein 1e-57 57
irlR4 YP_003980709.1 transcriptional activator protein IrlR 4 BAC0125 Protein 4e-62 57
irlR4 YP_003980709.1 transcriptional activator protein IrlR 4 BAC0197 Protein 4e-60 57
irlR4 YP_003980709.1 transcriptional activator protein IrlR 4 BAC0638 Protein 8e-50 54
irlR4 YP_003980709.1 transcriptional activator protein IrlR 4 BAC0111 Protein 3e-56 51
irlR4 YP_003980709.1 transcriptional activator protein IrlR 4 BAC0347 Protein 9e-50 49
irlR4 YP_003980709.1 transcriptional activator protein IrlR 4 BAC0308 Protein 2e-50 47
irlR4 YP_003980709.1 transcriptional activator protein IrlR 4 HE999704.1.gene1528. Protein 4e-33 42
irlR4 YP_003980709.1 transcriptional activator protein IrlR 4 AE000516.2.gene3505. Protein 3e-30 42
irlR4 YP_003980709.1 transcriptional activator protein IrlR 4 BAC0487 Protein 3e-27 41
irlR4 YP_003980709.1 transcriptional activator protein IrlR 4 U82965.2.orf14.gene. Protein 5e-30 41
irlR4 YP_003980709.1 transcriptional activator protein IrlR 4 CP000647.1.gene4257. Protein 7e-24 41
irlR4 YP_003980709.1 transcriptional activator protein IrlR 4 BAC0533 Protein 7e-24 41
irlR4 YP_003980709.1 transcriptional activator protein IrlR 4 CP001918.1.gene5135. Protein 9e-22 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
irlR4 YP_003980709.1 transcriptional activator protein IrlR 4 VFG0596 Protein 3e-54 52
irlR4 YP_003980709.1 transcriptional activator protein IrlR 4 VFG1389 Protein 7e-37 46
irlR4 YP_003980709.1 transcriptional activator protein IrlR 4 VFG1390 Protein 9e-40 43
irlR4 YP_003980709.1 transcriptional activator protein IrlR 4 VFG1386 Protein 2e-36 43
irlR4 YP_003980709.1 transcriptional activator protein IrlR 4 VFG0473 Protein 1e-30 42