Gene Information

Name : sepD (ECSP_4689)
Accession : YP_003080486.1
Strain : Escherichia coli TW14359
Genome accession: NC_013008
Putative virulence/resistance : Virulence
Product : LEE-encoded type III secretion system component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4670066 - 4670521 bp
Length : 456 bp
Strand : +
Note : -

DNA sequence :
ATGAACAATAATAATGGCATAGCAAAGAATGATTGTGACTGGCTAACGGCCCTTGATTTTGTAAAGGATGTCAACGGTTC
ACCAACGCATCTCACTTTTTATATCTACCAAAAAAATGCTTTCTTGCACGATTTTGGAAACTACTGGGTTCTATATATTG
AGCTTAGTGGTGATTTTCGTCAGGTTCCAACAGATACATTTATCAGACTCTGCAATATCCTGGCCGTTAGTAACGAATAT
AAACAAATGGGTATTTTCCTGTCTAATAAGAAGTGGTATCTTTGCCAAATTTTTCATAAAGATAATAATCATCGCGCAAA
CATGTCAAAAGCAATAATGCAACATACTCTCGCCTCTTTGCTCGATAAGCAATTTGATAAACTAGAGCAATTATCTTCAT
CAGATACAATGATGCCGCCAACACACTTGTTTTCTGATATAGGACGAATTGTGTAA

Protein sequence :
MNNNNGIAKNDCDWLTALDFVKDVNGSPTHLTFYIYQKNAFLHDFGNYWVLYIELSGDFRQVPTDTFIRLCNILAVSNEY
KQMGIFLSNKKWYLCQIFHKDNNHRANMSKAIMQHTLASLLDKQFDKLEQLSSSDTMMPPTHLFSDIGRIV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z5125 NP_290274.1 hypothetical protein Not tested LEE Protein 2e-67 100
ECs4574 NP_312601.1 SepD Virulence LEE Protein 2e-67 100
unnamed AAC31519.1 L0040 Not tested LEE Protein 2e-67 100
sepD ACU09464.1 SepD protein Virulence LEE Protein 2e-67 100
sepD YP_003236094.1 secretion switching protein SepD Virulence LEE Protein 2e-66 99
unnamed AAC38378.1 rOrf6 Not tested LEE Protein 2e-66 99
st18 CAC81856.1 ST18 protein Not tested LEE II Protein 3e-62 91
sepD CAI43880.1 SepD protein Virulence LEE Protein 3e-62 91
unnamed AAK26709.1 unknown Not tested LEE Protein 3e-62 91
sepD YP_003223481.1 secretion switching protein SepD Not tested LEE Protein 4e-62 91
sepD AAL57536.1 SepD Virulence LEE Protein 3e-62 91
sepD YP_003232147.1 secretion switching protein SepD Not tested LEE Protein 4e-62 91
unnamed AAL06363.1 SepD Virulence LEE Protein 2e-61 88
sepD AFO66325.1 putative LEE-encoded type III secretion system component Virulence SESS LEE Protein 1e-43 59
sepD AFO66409.1 putative LEE-encoded type III secretion system component Virulence SESS LEE Protein 1e-43 59

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sepD YP_003080486.1 LEE-encoded type III secretion system component VFG0818 Protein 7e-68 100
sepD YP_003080486.1 LEE-encoded type III secretion system component VFG0724 Protein 6e-67 99