Gene Information

Name : fliF1 (YP_0417)
Accession : NP_991811.1
Strain : Yersinia pestis 91001
Genome accession: NC_005810
Putative virulence/resistance : Virulence
Product : type III secretion system apparatus lipoprotein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4669
EC number : -
Position : 443046 - 443777 bp
Length : 732 bp
Strand : +
Note : highly similar to Yersinia pestis CO92 YPO0263. Contains Type III secretion system outer membrane K protein (Interpro|IPR003282, (GO:0009306), (GO:0015448)). Contains Secretory protein YscJ/FliF (Interpro|IPR006182)

DNA sequence :
ATGAAATCTCTGCGGCAGATGTTAGCGATAGTCCTAATGACATTATCCCTTTCCGGTTGTGATATGGAGCTGTATAGCGG
GCTGTCTGAGGGGGAGGCCAATCAAATGCTGGCATTGCTGATGCTGCACCAAATTAACGCCGAAAAACAGATCGAAAAGA
GCGGGATGGTGGGGCTAACGGTCGATAAGCGGCAATTTATTAATGCCGTTGAGTTGCTACGACAGAATGGTTTCCCCCGA
CAGCGTTTTATCACGGTGGATGAGCTGTTTCCTGCTAACCAGTTAGTGACCTCTCCCACGCAAGAGCAGGCCAAGATGGT
TTTTCTGAAAGAACAGCAGTTGGAAAACATGTTGAGCCATATGGATGGGGTGATTCATGCCGATGTCACGGTGGCAATGC
CTATGTCGGTTGACGGGAAAAACCCGCTTCCGCATACCGCCTCGGTGTTTATCAAGTATTCGCCGGAAGTCAATTTACAA
AGCTATCAGTCGCAAATCAAAGGGTTGGTCCGCGATGCGGTTCCCGGTATTGATTACGCCAAGATAAGCGTGGTGATGCA
GCCTGCGAACTACCGTTTCAGTGCCTCAGAGGCAGAGCAACAACAGGGGCCACAAACCACGGTGCAATGGTTATTACGCC
ATGTAGGAATGGTGCAGAACATGGTGGGAGTAGCGTTTATCTCACTTATTGTATTGATGTTTGTAGGCTGGTTTTACTAT
CGACGTCGGTAA

Protein sequence :
MKSLRQMLAIVLMTLSLSGCDMELYSGLSEGEANQMLALLMLHQINAEKQIEKSGMVGLTVDKRQFINAVELLRQNGFPR
QRFITVDELFPANQLVTSPTQEQAKMVFLKEQQLENMLSHMDGVIHADVTVAMPMSVDGKNPLPHTASVFIKYSPEVNLQ
SYQSQIKGLVRDAVPGIDYAKISVVMQPANYRFSASEAEQQQGPQTTVQWLLRHVGMVQNMVGVAFISLIVLMFVGWFYY
RRR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0263 YP_002345344.1 type III secretion system apparatus lipoprotein Virulence Not named Protein 3e-114 100
ssaJ CAA12196.1 SsaJ Virulence SPI-2 Protein 8e-50 53
ssaJ NP_460374.1 needle complex inner membrane lipoprotein Virulence SPI-2 Protein 3e-50 48
ssaJ NP_456119.1 putative pathogenicity island lipoprotein Virulence SPI-2 Protein 3e-50 48
ssaJ NP_805080.1 pathogenicity island lipoprotein Virulence SPI-2 Protein 3e-50 48
ssaJ CAA70532.1 secretion system apparatus Virulence SPI-2 Protein 2e-50 48
ssaJ YP_216417.1 secretion system apparatus protein SsaJ Virulence SPI-2 Protein 8e-50 48
escJ YP_003223480.1 T3SS structure protein EscJ Virulence LEE Protein 7e-36 42
escJ YP_003232148.1 T3SS structure protein EscJ Virulence LEE Protein 7e-36 42
escJ AAK26710.1 EscJ Virulence LEE Protein 5e-36 42
escJ AAL57537.1 EscJ Virulence LEE Protein 5e-36 42
escJ CAC81857.1 EscJ protein Virulence LEE II Protein 5e-36 42
escJ CAI43879.1 EscJ protein Virulence LEE Protein 5e-36 42
escJ AAC38379.1 EscJ Virulence LEE Protein 1e-36 41
escJ AAC31518.1 L0039 Virulence LEE Protein 1e-36 41
escJ ACU09463.1 EscJ protein Virulence LEE Protein 1e-36 41
escJ YP_003236093.1 T3SS structure protein EscJ Virulence LEE Protein 2e-36 41
escJ NP_290273.1 hypothetical protein Virulence LEE Protein 2e-36 41
ECs4573 NP_312600.1 EscJ Virulence LEE Protein 2e-36 41
unnamed AAL06364.1 EscJ Virulence LEE Protein 2e-36 41
lscJ AAO18027.1 LscJ Virulence TTSS locus Protein 1e-37 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliF1 NP_991811.1 type III secretion system apparatus lipoprotein VFG0510 Protein 1e-50 48
fliF1 NP_991811.1 type III secretion system apparatus lipoprotein VFG0218 Protein 1e-37 42
fliF1 NP_991811.1 type III secretion system apparatus lipoprotein VFG0817 Protein 7e-37 41
fliF1 NP_991811.1 type III secretion system apparatus lipoprotein VFG0725 Protein 7e-37 41