Gene Information

Name : Slin_4793 (Slin_4793)
Accession : YP_003389570.1
Strain : Spirosoma linguale DSM 74
Genome accession: NC_013730
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 5846067 - 5846744 bp
Length : 678 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: pfo:Pfl01_3855 two component heavy metal response transcriptional regulator

DNA sequence : 
ATGAAACTTCTGGTCGTTGAAGATGAGCCGAAAACCCTGCATGCCATTCAGCAGGGGCTGGAAGAGAGCCAGTTTGAGGT
CGATATTGCCTACGATGGGCTGCTTGCCAAACGGCTGGCGCTCAAAAATACCTATGCCGCTATCATCACCGACCTCATTT
TGCCGGGTCTGAACGGCTACGAGCTCTGCCGCCAGCTCCGGGCCGAGGGTGTGAGCACGCCTATTCTAATGCTGACGGCT
CTGGACGAGACCGAGGACCGGATTCAGGGCTTCGACGCCGGTGCCGATCAGTATTTGGCTAAACCATTTCAGTTTGCTGA
ATTGCTGGCGCGCGTACGCTCACTGACCAAACGAGGCACCCAGGTCACCATGACGGCCCAGATGCTCCGGTATGGCGGTA
TCGAGATCAATCTGGATGCCAAAACCGTCACGCGGGATGGCCAGCCAATAGAACTGACCGCCCGCGAGTTTGCCCTGCTG
GAATTTCTGATGCGGAACCAGGGGCGCGTCCTCTCCAAACCCGCCATTGCCGAGCACGTCTGGGATTTAAACTTCGACAC
GGGCACCAACGTCGTGGAGGTGTACATCAACTACCTCCGCAAGAAAATCGACAAGGGTTTCGACAAGAAGCTGATCCACA
CCCATTTCGGGATGGGGTATATGTTTAAGGAGGAATGA

Protein sequence : 
MKLLVVEDEPKTLHAIQQGLEESQFEVDIAYDGLLAKRLALKNTYAAIITDLILPGLNGYELCRQLRAEGVSTPILMLTA
LDETEDRIQGFDAGADQYLAKPFQFAELLARVRSLTKRGTQVTMTAQMLRYGGIEINLDAKTVTRDGQPIELTAREFALL
EFLMRNQGRVLSKPAIAEHVWDLNFDTGTNVVEVYINYLRKKIDKGFDKKLIHTHFGMGYMFKEE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 7e-42 45
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-41 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Slin_4793 YP_003389570.1 transcriptional regulator BAC0083 Protein 2e-51 52
Slin_4793 YP_003389570.1 transcriptional regulator BAC0638 Protein 5e-43 51
Slin_4793 YP_003389570.1 transcriptional regulator BAC0125 Protein 5e-48 49
Slin_4793 YP_003389570.1 transcriptional regulator BAC0111 Protein 1e-50 49
Slin_4793 YP_003389570.1 transcriptional regulator BAC0197 Protein 3e-43 46
Slin_4793 YP_003389570.1 transcriptional regulator BAC0347 Protein 3e-43 45
Slin_4793 YP_003389570.1 transcriptional regulator AE015929.1.gene1106. Protein 3e-31 43
Slin_4793 YP_003389570.1 transcriptional regulator NC_003923.1003417.p0 Protein 3e-35 42
Slin_4793 YP_003389570.1 transcriptional regulator NC_013450.8614146.p0 Protein 3e-35 42
Slin_4793 YP_003389570.1 transcriptional regulator NC_002951.3238224.p0 Protein 3e-35 42
Slin_4793 YP_003389570.1 transcriptional regulator NC_007793.3914065.p0 Protein 3e-35 42
Slin_4793 YP_003389570.1 transcriptional regulator NC_002758.1121390.p0 Protein 3e-35 42
Slin_4793 YP_003389570.1 transcriptional regulator NC_010079.5776364.p0 Protein 3e-35 42
Slin_4793 YP_003389570.1 transcriptional regulator NC_002952.2859858.p0 Protein 3e-35 42
Slin_4793 YP_003389570.1 transcriptional regulator NC_007622.3794948.p0 Protein 3e-35 42
Slin_4793 YP_003389570.1 transcriptional regulator BAC0308 Protein 3e-39 42
Slin_4793 YP_003389570.1 transcriptional regulator HE999704.1.gene1528. Protein 1e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Slin_4793 YP_003389570.1 transcriptional regulator VFG0596 Protein 3e-42 45