Gene Information

Name : ECH74115_5034 (ECH74115_5034)
Accession : YP_002273141.1
Strain : Escherichia coli EC4115
Genome accession: NC_011353
Putative virulence/resistance : Unknown
Product : IS911 transposase orfB
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 4685913 - 4686659 bp
Length : 747 bp
Strand : +
Note : identified by match to protein family HMM PF00665

DNA sequence :
TTGTGCAGCGAAATACGCCGGGCGTGGAACCAAAGTAGGGGCTCTGCGGGGGCGCGCACGCTGGCTGAAATGCTGACCCA
AAACGGCGTCCCGATGAGCCGTTACCGTGCCGGGCGTCTGATGAAATATCTGAACCTGAGCAGTTGTCAGCCCGGAAAAC
ATCAGTACAAAAATGCTCGTCAGGAACATACCTGCCTGCCGAATCTGCTTGAGCGCCAGTTCGCTGTGCCCGAGCCAGAT
AGGGTATGGTGCGGAGATATTACGTATATCTGGGCAGGAAATCGCTGGTGCTATCTGGCGGTCGTCATGGATCTTTTTGC
CCGCAGGGTTATCGGCTGGAGCCTGTCAGCGAATGCCGATACTGCCCTGATAAGCAGTGCCCTGCGGATGGCGTATGAGG
TGCGTGGTCAGCCGCGGGACGTCATGTTCCATAGCGACCAGGGAAGTCAATATACAGGACTGAAATATCAACAACTTCTC
TGGCGTTACAGGATAAAGCAAAGTGTCAGCCGACGGGGAAACTGCTGGGATAACAGTCCAATGGAACGCTTCTTCCGCAG
TCTGAAAACAGAATGGGTGCCAACCGATGGCTACACAGGCAAAGACGTGGCCCGGCAGCAAATCAGCAGTTATATTCTGA
ATTATTACAATAGCGTCAGGCCTCACCATTATAACGGAGGGCTGACGCCGGAAGAGTCAGAGAACAGATATCATTTTTAC
TGTAAAACCGTGGCCAGTATTACTTGA

Protein sequence :
MCSEIRRAWNQSRGSAGARTLAEMLTQNGVPMSRYRAGRLMKYLNLSSCQPGKHQYKNARQEHTCLPNLLERQFAVPEPD
RVWCGDITYIWAGNRWCYLAVVMDLFARRVIGWSLSANADTALISSALRMAYEVRGQPRDVMFHSDQGSQYTGLKYQQLL
WRYRIKQSVSRRGNCWDNSPMERFFRSLKTEWVPTDGYTGKDVARQQISSYILNYYNSVRPHHYNGGLTPEESENRYHFY
CKTVASIT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAC31485.1 L0006 Not tested LEE Protein 1e-100 100
unnamed ACU09432.1 IS911 transposase orfB Not tested LEE Protein 2e-104 100
ECs4537 NP_312564.1 hypothetical protein Not tested LEE Protein 2e-100 100
Z5089 NP_290241.1 transposase Not tested LEE Protein 2e-104 100
unnamed CAI43898.1 putative transposase Not tested LEE Protein 6e-100 95
aec65 AAW51748.1 Aec65 Not tested AGI-3 Protein 6e-100 95
ECO111_3779 YP_003236114.1 putative IS602 transposase OrfB Not tested LEE Protein 6e-110 95
orfB AGK07051.1 IS1359 transposase; OrfB Not tested SGI1 Protein 5e-74 64
orfB ACX47958.1 IS1359 transposase; OrfB Not tested SGI1 Protein 5e-74 64
VC1789 NP_231424.1 transposase OrfAB subunit B Not tested VPI-2 Protein 7e-74 64
VPI2_0008c ACA01825.1 transposase OrfAB subunit B Not tested VPI-2 Protein 5e-74 64
orfB YP_001217329.1 transposase OrfAB subunit B Not tested VPI-2 Protein 7e-74 64
orfB AGK06910.1 IS1359 transposase; OrfB Not tested SGI1 Protein 5e-74 64
overlap with orfA characteristic of IS3 family members AGK06947.1 IS1359 transposase; OrfB Not tested SGI1 Protein 5e-74 64
orfB AGK06993.1 IS1359 transposase; OrfB Not tested SGI1 Protein 5e-74 64
l7094 CAD33743.1 ORF B protein Not tested PAI I 536 Protein 1e-67 62
orfB CAE85178.1 OrfB protein, IS911 Not tested PAI V 536 Protein 1e-67 62
RS04 AAP82949.1 putative transposase Not tested PAPI-2 Protein 2e-62 54

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECH74115_5034 YP_002273141.1 IS911 transposase orfB VFG0785 Protein 1e-104 100
ECH74115_5034 YP_002273141.1 IS911 transposase orfB VFG1122 Protein 3e-74 64
ECH74115_5034 YP_002273141.1 IS911 transposase orfB VFG1484 Protein 8e-68 62