Gene Information

Name : PSEBR_a4612 (PSEBR_a4612)
Accession : YP_004356032.1
Strain : Pseudomonas brassicacearum NFM421
Genome accession: NC_015379
Putative virulence/resistance : Virulence
Product : two-component response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 5611008 - 5611691 bp
Length : 684 bp
Strand : +
Note : -

DNA sequence :
ATGCGCGTTCTGATTATCGAAGACGAAGAAAAAACCGCGGACTATCTGCACCGCGGCCTGAGCGAACAGGGTTACACCGT
GGACGTGGCGCCGGACGGCATCGAGGGGCTGCACCTGGCCCTGGAAACCGACTACGCGGTGATCGTGCTCGACGTAATGC
TACCGGGCCTGGACGGCTTCGGCGTACTGCGAGCCCTGCGCGCCCGCAAGCAGACACCGGTGATCATGCTTACCGCCCGG
GAACGGGTCGAGGACCGCATCAAGGGCTTGCGCGACGGCGCCGATGACTACCTGGGCAAGCCCTTCTCCTTCCTCGAACT
GGTGGCCCGCCTGCAAGCCCTGACTCGTCGCAGCGGCGGCCATGAACCGGTGCAGGTGAGCATCGCCGACCTGTGGATCG
ACCTGATCAGCCGCAAGGCCACACGGGCCGGCCAGCGCCTGGACCTGACGGCCAAGGAGTTCTCCCTGCTCAGTGTCCTG
GCCCGCCGCCAGGGCGAAATCCTCTCGAAAACCGCCATTGCCGAAATGGTCTGGGACATCAACTTCGACAGTGACGCCAA
CGTGGTGGAAGTGGCGATCAAACGCTTGCGAGCCAAGCTCGATGGGCCGTTCGAACAGAAGTTGCTGCACACCATTCGCG
GCATGGGTTATGTGCTGGAGAGTCGCAGCGATGACCGTCCCTGA

Protein sequence :
MRVLIIEDEEKTADYLHRGLSEQGYTVDVAPDGIEGLHLALETDYAVIVLDVMLPGLDGFGVLRALRARKQTPVIMLTAR
ERVEDRIKGLRDGADDYLGKPFSFLELVARLQALTRRSGGHEPVQVSIADLWIDLISRKATRAGQRLDLTAKEFSLLSVL
ARRQGEILSKTAIAEMVWDINFDSDANVVEVAIKRLRAKLDGPFEQKLLHTIRGMGYVLESRSDDRP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-56 56
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-56 55

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSEBR_a4612 YP_004356032.1 two-component response regulator BAC0197 Protein 8e-60 57
PSEBR_a4612 YP_004356032.1 two-component response regulator BAC0125 Protein 2e-63 57
PSEBR_a4612 YP_004356032.1 two-component response regulator BAC0083 Protein 2e-58 56
PSEBR_a4612 YP_004356032.1 two-component response regulator BAC0638 Protein 2e-51 54
PSEBR_a4612 YP_004356032.1 two-component response regulator BAC0111 Protein 6e-58 52
PSEBR_a4612 YP_004356032.1 two-component response regulator BAC0308 Protein 1e-55 50
PSEBR_a4612 YP_004356032.1 two-component response regulator BAC0347 Protein 1e-52 50
PSEBR_a4612 YP_004356032.1 two-component response regulator HE999704.1.gene1528. Protein 3e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSEBR_a4612 YP_004356032.1 two-component response regulator VFG0596 Protein 4e-57 56
PSEBR_a4612 YP_004356032.1 two-component response regulator VFG1389 Protein 2e-38 46
PSEBR_a4612 YP_004356032.1 two-component response regulator VFG1386 Protein 8e-37 45
PSEBR_a4612 YP_004356032.1 two-component response regulator VFG1390 Protein 7e-40 41